Results for "NT"
Bio-Scripts
Lenovo-ideapad-320-15ISK:~/VANSH$ conda update -n base conda Collecting package metadata (current_repodata.json): done Solving environment: done ## Package Plan ## environment location: /home/...923 days ago
Perl script to rename the fasta file !
#Script #1 #!/usr/bin/perl -w use strict; #USAGE #perl extractPattern.pl kmerfasta > uniref100_result_broad my %kHash; local $/ = '>'; my $infile2 = "$ARGV[0]"; # Kmer fasta open( FH2, '919 days ago
- ...install the compiler, you need to open the cmd, navigate to the folder containing the .cpp files using th...ach.cpp g++ -o NewFileName Infect.cpp Change "NewFileName" to w/e you want to name each exe file. The...
911 days ago
- ...| paste - - - - |cut -f 1, 2| sed 's/@/>/'g | tr -s "/t" "/n" > OUTFILE.fasta #awk cat infile.fq | awk '{if(NR%4==1) {printf(">%s\n",substr($0,2));} else if(NR%4==2) print;}' > file.fa #seqtk seqtk...
911 days ago
- ...rty_lib/ views/ default/ example/ component.css component.js component.png...widgets/ example_widget/ content.php edit....
899 days ago
Installing SEVA environment in Conda !
...aml Collecting package metadata (repodata.json): done Solving environment: done Downloading and Extr...action: done Executing transaction: done # # To activate this environment, use # # $ conda activa...899 days ago
Extract all fasta sequences except ids !
...umber the kmers perl storeKmer.pl omi_kmer19_formated.fa > omi_kmer19_formated_numbered.fa # cat all *.rd file cat *.rd > all_reads_hits #count the lines in each file -- go...889 days ago
- [abhi@hn1 MetaCarvel]$ conda install -c conda-forge ruby Collecting package metadata (current_repodata.json): done Solving environment: done ## Package Plan ## environment location: /home/abhi...
886 days ago
- ...ecting package metadata (current_repodata.json): done Solving environment: failed with repodata from cu...36065_2 905 KB fontconfig-2.12.6 |...::expat-2.4.1-h2531618_2 fontconfig pkgs/main/linux...ng and Extracting Packages fontconfig-2.12.6 | 221 KB |...
886 days ago
bash script to extract sequence by ids !
Use a Perl one-liner, grep and seqtk subseq to extract the desired fasta sequences: # Create test input: cat > in.fasta BGI_novel_T016313 Solyc03g025570.2.1 TT...884 days ago
