Results for "5"
Bio-Scripts
Perl script to merge LastZ overlaps
#!/usr/bin/perl use strict; use warnings; use 5.010; # Filter out the exact/direct overlaps from tab seperated alignment file. (lastz format=general- ready) # Do not inclide header in lastz outfile # USAGE: perl filterOverlaps.pl infile > outfile open my $fh, '2156 days ago
- ...ta --output=transrateSTAT [ INFO] 2018-07-13 14:54:03 : Loading assembly: /medi...ityAssembly/Trinity.fasta [ INFO] 2018-07-13 14:54:21 : Analysing assembly: /me...eSTAT/Trinity/contigs.csv [ INFO] 2018-07-13 14:54:40 : Writing analysis result...
2154 days ago
- ...names & download URLs. sample_links = {"ERR458493": "https://osf.io/5daup/download", "ERR458494":"https://osf.io/8rvh5/download",...f.io/xju4a/download", "ERR458501": "https://osf.io/nmqe6/d...
1547 days ago
Installing Porechop on Ubuntu !
...to 'Porechop'... remote: Counting objects: 1579, done. remote: Total 1579 (delta 0), reused 0 (delta...barcode to be binned (default: 75.0) --barcode_diff BARCODE_...o call) (default: 5.0) --require_two_barcodes...2136 days ago
- ..." /home/urbe/Tools/Reapr_1.0.18/reapr score -P 5 00.assembly.fa.gaps.gz 00.in..../reapr summary 00.assembly.fa 03.score 04.break 05.summary --------..." /home/urbe/Tools/Reapr_1.0.18/reapr score -P 5 00.assembly.fa.gaps.gz 00.in....
2130 days ago
- ...ache/pip/wheels/23/26/eb/83ac050fa1d31ed660d26a2508a47799728b...ners_and_callers/Sniffles-1.0.5/build Scanning dependencies...ners_and_callers/Sniffles-1.0.5/lib/bamtools-2.3.0/src/api/in...ners_and_callers/Sniffles-1.0.5/src/cluster/Cluster_SVs.cpp:1...
2129 days ago
Install Python locally on shared Linux server !
...cd ~/python wget https://www.python.org/ftp/python/2.7.11/Python-2.7.11.tgz tar zxfv Python-2.7.11.tgz find ~/python -type d | xargs chmod 0755 cd Python-2.7.11 #Then I...2129 days ago
Installing Busco version 4.0.6
(base) jit@jit-HP-Pro-3335-MT: conda install -c bioconda...inux-64-7.3.0 | h553295d_18 22 KB cond...equirements-2.140| pl526_0 12 KB bioconda...147 | r36h9bbef5b_1 2.3 MB conda-forg...locale-maketext-simple-0.21-pl526_2 perl-module-build bio...1483 days ago
- ...Resolving github.com (github.com)... 192.30.253.113, 192.30.253.112 Connecting to github.co...e3-124a69f123c8?X-Amz-Algorithm=AWS4-HMAC-SHA256&X-Amz-Credential=AKIAIWNJYAX...HMAC-SHA256&X-Amz-Credential=AKIAIWNJYAX4CSVEH53A%2F20180830%2Fus-east-1%2Fs3...
2106 days ago
- ...master -> FETCH_HEAD 9544316e..dc8811f8 master -> origin/master Updating 9544316e..dc8811f8 Fast-forward...r-machine | 359 ++++++++++++++++++++++++++++...| 153 ++++++++++++++++++++--------...
2105 days ago
