Results for "6"

Bio-Scripts

  • Installing nupack3.0.6

    ...s git:(master) ✗ cd nupack3.0.6 ➜ nupack3.0.6 git:(master) ✗ make make -C...~~~~~~~~~~~~~~~~~~ init.c:1236:7: warning: ignoring return v...~~~~~~~ ReadCommandLineNPK.c:664:7: warning: ignoring return...y '/home/urbe/Tools/nupack3.0.6/nupack3.0.6/src/design/single...

    2075 days ago

  • Install HTSLIB on Ubuntu !

    ...ub-production-release-asset-2e65be.s3.amazonaws.com/4339773/f...equest&X-Amz-Date=20181025T113641Z&X-Amz-Expires=300&X-Amz-Si...res=300&X-Amz-Signature=2ec8006aeb069dae00035e224e9c2af7b980d...t/tabix/large_chr.20.1.2147483647.out htslib-1.9/test/tabix/...

    2068 days ago

  • Installing Platypus on Ubuntu !

    ...1) ... Setting up libpython3.6-stdlib:amd64 (3.6.6-1~18.04)...so libhts.so.2 install -p -m 644 libhts.so /usr/local/lib/li...align.c -o build/temp.linux-x86_64-2.7/c/align.o -funroll-loo...ython2.7 -o build/lib.linux-x86_64-2.7/variantFilter.so cyth...

    2068 days ago

  • Bash color variables

    ...0;35m' # Purple Cyan='\033[0;36m' # Cyan White='\033...1;35m' # Purple BCyan='\033[1;36m' # Cyan BWhite='\033...3[45m' # Purple On_Cyan='\033[46m' # Cyan On_White='\0...;105m' # Purple On_ICyan='\033[0;106m' # Cyan On_IWhite='\033[...

    2067 days ago

  • Script to Plot the Coverage

    ...erage script chr=$1 start=$2 end=$3 samtools depth deduped_MA605.bam > deduped_MA605.coverage awk '$1 == $chr...overage > chr1_MA605.coverage #awk '$1 == 2 {print $0}' deduped_MA605.coverage > chr2_MA605.cover...

    2052 days ago

  • Setting up falconUnzip conda environments for genome assembly !

    ...| py27hae42fb6_1 7.2 MB bioconda...| py_0 226 KB conda-forge cryptogr...| hb1c47c0_0 1.6 MB conda-forge --------...pbcore: 1.6.5-py27_0 biocon...

    2038 days ago

  • Sync github repo

    http://stackoverflow.com/questions/6373277/git-sync-local-repo-with-remote-one This makes your local repo exactly like your remote repo. Remember to replace origin and master w...

    2030 days ago

  • Backward Elimination with Python

    ...ues and Adjusted R Squared: import statsmodels.formula.api as sm def backwardElimination(x, SL): numVars = len(x[0]) temp = np.zeros((50,6)).astype(int) for i in r...

    2004 days ago

  • Install blast locally

    ...//ftp.ncbi.nlm.nih.gov/blast/executables/blast+/LATEST/ncbi-blast-2.8.1+-x64-linux.tar.gz # decompress tar -zxvf ncbi-blast-2.8.1+-x64-linux.tar.gz # add BLAST...

    1810 days ago

  • Palindrome Simulation commands !

    ...15 mutate.sh in= mutant15CH101.fasta out=mutant153CH101.fasta id=97 3316 mutate.sh in=mutant15CH101.f...wise.py -c 0 -p 4 -K 250 -t 10 -o simPalBwise -x interleavedPE.fasta 3326 cd masurca; ~/Tools/MaSuRCA-...

    1784 days ago