Results for "C"
Bio-Scripts
Python script to convert fastq to fasta
...le header = fq.readline().strip() sequence = fq.readline().strip()...quality = fq.readline().strip() # Check for EOF...102 days ago
Python script to parse GFF file
...if not line.startswith('#'): # Ignore comment lines...'seqid': fields[0], 'source': fields[1],...'end': int(fields[4]), 'score': fields[5],...102 days ago
Python script to create fastq file with random sequences
...random def generate_random_sequence(length): bases = ['A', 'C', 'G', 'T'] return ''.join(random.choice(bases) for _ in range(length...) def generate_fastq_entry(sequence_length): sequence = gen...entry = generate_fastq_entry(sequence_length) f.write...27 days ago
Python script to calculate basic genome stats !
from Bio import SeqIO def calculate_genome_stats(fasta_file)...t = 0 a_count = 0 t_count = 0 c_count = 0...genome_length += len(sequence) a_count += sequenc...e_length} bp") print(f"A Count: {a_count}") print(f...27 days ago
Python script to parse a FASTQ file !
#Python script to parse a FASTQ file and extract basic information such as the sequence identifier, se...ze a list to store parsed sequences sequences = []..._file, "fastq"): sequence_info = { "id":...uences for seq in parsed_sequences: print(f"ID: {seq['id'...27 days ago
