Results for "conda"
Bio-Scripts
$ pangolin --update #Major update conda activate pangolin git pull conda env update -f environment.yml pip install . re-installs pangolin.944 days ago
Run Pango on your multifasta file !
...ml (base) [jnarayan@hn1 FASTA]$ conda activate pangolin (pangolin)...Trained model: /home/jnarayan/anaconda3/envs/pangolin/lib/python3.8/...ib Header file: /home/jnarayan/anaconda3/envs/pangolin/lib/python3.8/.../2021, 13:10:08 /home/jnarayan/anaconda3/envs/pangolin/lib/python3.8/...929 days ago
- ...novo-ideapad-320-15ISK:~/VANSH$ conda update -n base conda Collecting package metadata...ironment location: /home/Jit/anaconda3 added / updated specs:...yhd3eb1b0_0 9 KB conda-4.11.0 | py38...1b0_0 --> 1.6.4-pyhd3eb1b0_0 conda conda-forge::con...
904 days ago
Installing SEVA environment in Conda !
(base) [jnarayan@hn1 SEVA_codes_and_files]$ conda env create -f SEVA.yaml Collec...To activate this environment, use # # $ conda activate SEVA # # To deactivate an active environment, use # # $ conda deactivate...879 days ago
- [abhi@hn1 MetaCarvel]$ conda install -c conda-forge ruby Collecting package m...ironment location: /home/abhi/anaconda3/envs/abhi added / updat...h0a1914f_2 190 KB conda-forge ruby-2.6.6...STALLED: gdbm conda-forge/linux-64::gdbm-1.18-h0a...
867 days ago
- (abhiENV) [abhi@hn1 output_OM824]$ conda create -n mgsc python=3.6 graphviz numpy...an ## environment location: /home/abhi/anaconda3/envs/mgsc added / updat...To activate this environment, use # # $ conda activate mgsc # # To deacti...
867 days ago
bash script to extract sequence by ids !
...3.1 CTGACGTATACAATTAAGCCGCG >BGI_novel_T018109 Solyc03g080075.1.1 GCAAGGGAAAGAAGTATTACTAG Note that seqtk can be installed, for example, using conda.865 days ago
- ...reators of GATK recommend running GATK through conda which is a package, environme...and dependency management software, in essence conda basically creates a virtual e...# make sure ubuntu user can create their own conda environments sudo chown -R u...
853 days ago
- (base) [me@hn1 ME]$ conda update conda Collecting package metadata (cur...environment location: /home/me/anaconda3 added / updated specs:...coreutils bioconda::coreutils-8.25-1 --> pkgs/ma...nnel: gawk conda-forge::gawk-5.1.0-h516909a_0...
827 days ago
- (base) [lege@hn1 testVisanu]$ conda create -n pythonENV python=3.10 scipy=1.13.0 astroid babel Channels: - conda-forge - bioconda - defaults Platform: linux-64 Collecting package metadata (repodata.json): done Solving environment: done ==> WARNING: A newer version of conda exists.
34 days ago
