Python script to convert fastq to fasta
...() fq.readline() # Skip the '+' line quality = fq.readline().strip() # Check for EOF if n...91 days ago
Python script to finds extact similar sequence between two multi fasta files !
from Bio.Blast.Applications import NcbiblastnCommandline import os import sys def...=100) # Run BLAST stdout, stderr = blastn_cline() # Check for errors if stderr:...55 days ago
Python script to create fastq file with random sequences
import random def generate_random_sequence(length): bases = ['A', 'C', 'G', 'T']...es) for _ in range(length)) def generate_random_quality(length): return ''.join(...e = generate_random_sequence(sequence_length) quali...16 days ago
Python script to parse a FASTQ file !
#Python script to parse a FASTQ file and extract basic information such as...he sequence identifier, sequence, and quality scores #pip install biopytho...ence": str(record.seq), "quality": record.letter_annotations["...nce: {seq['sequence']}") print(f"Quali...16 days ago