Run Pango on your multifasta file !
#More at https://cov-lineages.org/resources/pangolin/usage.html (base...The query file is:/home/jnarayan/RF_DATA/FASTA/Input_for_Cova_all_samp...tected: 320 Total passing QC: 293 Data files found: Trained model:...ut file written to: /home/jnarayan/RF_DATA/FAS...915 days ago
Installing SEVA environment in Conda !
(base) [jnarayan@hn1 SEVA_codes_and_files]$ conda env create -f SEVA.yaml Collecting package metadata (repodata.json): done Solving environm...###################################### | 100% r-data.tab...866 days ago
Install StringTie on ubuntu / Linux !
#StringTie is a software program to perform transcript assembly and quantification of RNAseq data. The binary distributions are available so to install we can just download this distribution and extra...851 days ago
Install Varscan on Ubuntu / Linux !
#Varscan is a java program designed to call variants in sequencing data. It was developed at the Genome Institute at Washington University and is hosted on github. To use Varscan we simpl...851 days ago
R script to covert and export html page to png
# Library library(streamgraph) # Create data: data446 days ago
Download lumpy skin disease data !
Location https://www.ncbi.nlm.nih.gov/sra?linkname=bioproject_sra_all&from_uid=880745 The raw genome sequence data from the 2022 outbreak in India is available in the SRA Project PRJNA880745438 days ago
327 days ago