Python script to convert fastq to fasta
...# Write to the FASTA file fa.write('>' + header[1:] + '\n') fa.write(sequence + '\n') # Usage example fastq_to_fasta('inpu...83 days ago
Python script to parse GFF file
...es': dict(item.split('=') for item in fields[8].split(';')) } features.append(feature) return features # Usage example gff_file = 'example....83 days ago
Python script to finds extact similar sequence between two multi fasta files !
...igned Query Sequence:", qseq) # Print other relevant information if needed def main(): if len(sys.argv) != 4: print("Usage: python script.py query.fasta...47 days ago
Python script to calculate basic genome stats !
...T Count: {t_count}") print(f"C Count: {c_count}") print(f"G Count: {g_count}") print(f"GC Content: {gc_content:.2f}%") # Example usage fasta_file = "path/to/your/g...8 days ago
Python script to parse a FASTQ file !
..."quality": record.letter_annotations["phred_quality"] } sequences.append(sequence_info) return sequences # Example usage fastq_file = "path/to/your/s...8 days ago