Results for "PA"
Bio-Scripts
Bash command to install Miniconda !
...9/miniconda3] >>> PREFIX=/data/sata_data/workshop/wsu29/miniconda3 Unpacking payload ... Collecting package...conda pkgs/main/linux-64::conda-4.7.12-py37_0 conda-package-han~ pkgs/main/linux-64:...1607 days ago
Bash command to install bwa, samtools, picard !
...21.8 MB The following NEW packages will be INSTALLED:...Downloading and Extracting Packages certifi-2019.11.28 |...8.0 MB The following NEW packages will be INSTALLED:...302.7 MB The following NEW packages will be INSTALLED:...1607 days ago
Bash command to install GATK, Bedtools and SnpEff !
...0 189 KB r-colorspace-1.4_1 | r36h96ca...92.5 MB The following NEW packages will be INSTALLED:...Downloading and Extracting Packages pip-20.0.2 |...install bedtools Collecting package metadata (repodata.json)...1607 days ago
- ...ode-block-stream node-brace-expansion node-builtin-modules...ic/universe amd64 node-fs.realpath all 1.0.0-1 [5,572 B] Get:...universe amd64 node-normalize-package-data all 2.3.5-2 [10.6 k...lecting previously unselected package node-delayed-stream. Pr...
1605 days ago
- ...t-get install rakudo [sudo] password for jit: Reading package lists... Done Building...valgrind The following NEW packages will be installed: l...lecting previously unselected package libjs-angularjs. (Readi...18.03+dfsg-2_amd64.deb ... Unpacking nqp (2018.03+dfsg-2) ......
1603 days ago
- ...(136/136), done. remote: Total 10255 (delta 115), reused 153 (delta 81), pack-reused 10037 Receiving obj...tring::FuzzyIndex ===> Searching for: String::FuzzyIndex ===> Updating cpan mirror: https://raw.githubus...
1603 days ago
Perl script to delete the adjacent repeats !
...r more helps ... check out this #This bit of code will do the job: $string =~ s/(.)\1/$1/g #Alternatively, if you want to ignore case when comparing, you could use: $strin...1603 days ago
Install Nucmer on Linux / Ubuntu
...sudo apt install mummer [sudo] password for jit: Reading package lists... Done Building.... Done The following additional packages will be installed: g...on, 3,521 kB of additional disk space will be used. Do you want...ly installed.)............] Preparing to unpack .../gawk_1%3a4....1602 days ago
Install python pip and numpy on Linux / Ubuntu
...-xdg python2.7-dev Suggested packages: python-crypto-doc p..., 50.1 MB of additional disk space will be used. Do you want...lecting previously unselected package libexpat1-dev:amd64. (R...age python-secretstorage. Preparing to unpack .../11-python-s...1602 days ago
Install miniasm in Linux / Ubuntu
...$ sudo apt install miniasm Reading package lists... Done Building...n... Done The following additional packages will be installed: m...eration, 136 kB of additional disk space will be used. Do you want...s) Selecting previously unselected package miniasm. (Reading datab...1602 days ago
