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Bio-Scripts

• • Jit@jit.aber

  

  Install Kraken2 using conda !

  (JitMetaENV) ➜ day2 conda install -c bioconda kraken2 Collecting package metadata (current_repodata.json): done Solving environment: failed with initial frozen sol...

  1267 days ago

• • Jit@jit.aber

  

  Install quast using conda !

  (JitMetaENV) ➜ ~ conda install -c bioconda quast Collecting package metadata (current_repodata.json): done Solving environment: done ==> WARNING: A newer vers...

  1267 days ago

• • Jit@jit.aber

  

  Install prokka using conda !

  (JitMetaENV) ➜ assembly conda install -c bioconda prokka Collecting package metadata (current_repodata.json): done Solving environment: failed with initial frozen...

  1267 days ago

• • Jit@jit.aber

  

  Install seqtk using conda !

  (JitMetaENV) ➜ META_PE conda install -c bioconda seqtk Collecting package metadata (current_repodata.json): done Solving environment: done ==> WARNING: A newer version of conda exists.

  1267 days ago

• • Jit@jit.aber

  

  Install bwa using conda !

  (JitMetaENV) ➜ assembly conda install -c bioconda bwa Collecting package metadata (current_repodata.json): done Solving environment: done ==> WARNING: A newer version of conda exists.

  1267 days ago

• • Jit@jit.aber

  

  Install asciigenome using conda !

  (JitMetaENV) ➜ viruses conda install -c bioconda asciigenome Collecting package metadata (current_repodata.json): / done Solving environment: done ==> WARNING: A newer version of conda exists.

  1267 days ago

• • Jit@jit.aber

  

  Download minikraken database !

  ...Current Dload Upload Total Spent Left...en2_v2_8GB_201904.tgz minikraken2_v2_8GB_201904_UPDATE/ minikraken2_v2_8GB_2019...e150mers.kmer_distrib minikraken2_v2_8GB_201904_UPDATE/database200mers.kmer_dist...

  1266 days ago

• • Jit@jit.aber

  

  Install krona using conda !

  (JitMetaENV) ➜ day3 conda install -c bioconda krona Collecting package metadata (current_repodata.json): done Solving environment: done ==> WARNING: A newer version of conda exists. 2020.12.5-py36h5fab9bb_1 Proceed ([y]/n)?

  1266 days ago

• • Jit@jit.aber

  

  Install maxbin2 using conda !

  (JitMetaENV) ➜ day3 conda install -c bioconda maxbin2 Collecting package metadata (current_repodata.json): done Solving environment: failed with initial frozen sol...

  1266 days ago

• • Jit@jit.aber

  

  Create random 10000 SNPs in genome !

  (base) ➜ dupStudy git:(master) ✗ perl ../simuG.pl -refseq SGDref.R64-2-1.dups.fa -snp_count 10000 -prefix sim...

  1263 days ago

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