Jit
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Create random 10000 SNPs in genome !
By Jit 1412 days ago
(base) ➜ dupStudy git:(master) ✗ perl ../simuG.pl -refseq SGDref.R64-2-1.dups.fa -snp_count 10000 -prefix simuSNP
[Sun Jan 10 16:05:57 2021]
Starting simuG ..
[Sun Jan 10 16:05:57 2021]
Check specified options ..
Running simuG for SNP/INDEL simulation >>
Ignore all options for CNV/inversion/translocation simulation.
This simulation use the random seed: 811014067
The option snp_count has been specified: snp_count = 10000
The option titv_ratio has been specified: titv_ratio = 0.5
[Sun Jan 10 16:05:57 2021] Introducing random SNPs based on the following parameters:
> snp_count = 10000
> titv_ratio = 0.5
[Sun Jan 10 16:05:57 2021]
Simulation completed! :)
[Sun Jan 10 16:05:57 2021]
Generating output files ..
Generating the correspondance map for genomic variants introduced during simulation:
simuSNP.refseq2simseq.map.txt
Generating reference-based vcf file for genomic variants introduced during simulation:
simuSNP.refseq2simseq.SNP.vcf
[Sun Jan 10 16:05:57 2021]
Done! :)
