Results for "Database Designing"
Bio-Scripts
Retrieve NCBI GenBank records with a range of accession numbers
#!/usr/bin/perl #FILE: ncbi_search.pl #AUTH: Paul Stothard (paul...outputFile => undef, database => undef, returnType =...\$param{outputFile}, 'd|database=s' => \$param{database},...) or !( defined( $param{database} ) ) or !( defined( $par...2952 days ago
Converting from Windows-style to UNIX-style line endings with dos2unix
Lenovo-ideapad-320-15ISK:~/Downloads/abc/bin$ sudo apt install dos2unix [sudo] password for bioqueen: Reading...3s (130 kB/s) Selecting previously unselected package dos2unix. (Reading database...1213 days ago
Blast script to index and extract sequence !!
# look at the file $ head EC4115.fa >NC_011353.1 Escherichia coli O157:H7 str. EC4115...CAGACAGATAAAAATTACAGAGTAC # generate the blast database $ makeblastdb -dbtype nucl -...AATATAGGCATAGCGCACAGAC .... # query the blast database...2888 days ago
Install ATOM editor on Elemantory OS / Ubuntu
#Download ATOM deb file from https://atom.io/ https://atom.io/download/deb (base) bioqueen@bioqueen-Lenovo-ideap...(219 kB/s) Selecting previously unselected package gconf2-common. (Reading database...1212 days ago
- #!/usr/local/bin/perl -w # NOTE: YOU MUST CHANGE THE LINE ABOVE TO POINT T...: ___.png A database file containing the...in your sequence. This database is not human-readable,..."$dotfile", 0666) || die "Can't open database...
2729 days ago
BASH script for SelfBLAST a genome
#!/bin/bash #self BLAST a genome -- Expecting you have blast and samtools installed in your system #Author: Jite...nts, Detail of the arguments: $@" if [ -f $MYDB.nhr ] then echo "BLAST database...2688 days ago
Extract fasta sequence from a multifasta file with coordinates
#!/usr/bin/perl use Bio::DB::Fasta; #USAGE perl extractFASTAwithSIZE.pl finalSample_filtered.fa 0 1000 > aaaa...t ">$id\n", "$sequence\n"; } __END__ use Bio::DB::Fasta; # Create database...2568 days ago
Installing Platypus on Ubuntu !
(py27) ➜ Tools git:(master) ✗ git clone https://github.com/andyrimmer/Platypus.git Cloning in...(Reading database...2055 days ago
- $ sudo apt-get install rakudo [sudo] password for jit: Reading package lists... Done Building dependency tree...Selecting previously unselected package libjs-angularjs. (Reading database...
1587 days ago
- $ sudo apt install npm Reading package lists... Done Building dependency tree Reading state information......s from packages: 100% Selecting previously unselected package gyp. (Reading database...
1589 days ago
