2298 days ago
Long reads mapper bash script !
#!/bin/bash #only for LONG READS mapping #USAGE: runMapper.sh minimap2 ref.fa reads.fa/fq 48 ont...d $refFasta $longReads > $fileName.out.sam elif [ $readsType == "pacbio" ]; then $lamsaLoc aln -t $thread -T pacb...2169 days ago
Installing pb-assembly on Linux !
[jnarayan@hmem00 ~]$ module avail --------------------------------------------------...# # PacBio(R) tools distributed via Bioc...eases on Bioconda live up to the # # quality that PacB...2080 days ago
Setting up falconUnzip conda environments for genome assembly !
➜ Analysis_Results conda create -n denovo_asm Solving environment: done ## Package...# # PacBio(R) tools distributed via Bioc...eases on Bioconda live up to the # # quality that PacB...2036 days ago
1771 days ago
974 days ago
Bash script to simulate a genome !
# Reference https://github.com/chhylp123/hifiasm/issues/33 # Use Drosophila melongaster PacBio assembly cd /genetics/elbers/test/fly2...fasta.gz \ illuminanames=t addslash=t \ pacbio=t pbmin=0.13 pbmax=0.17 \ re...# make 30x haploid coverage for PacB...964 days ago