Results for "extraction"
Bio-Scripts
Blast result parser with Perl and Bioperl
...number\tlength\tdescription\tE value\tbit score\tframe\tquery_start\t"; print OUT "query_end\thit_start\thit_end\tpositives\tidentical\n"; # extraction of information for each resul...2956 days ago
- #GffRead: GFF/GTF utility providing format conversions, filtering, FASTA sequence extraction and more. https://github.com/gpertea/gffread (jitENV) jitendra@Bathymodiolus:~$ conda in...
1245 days ago
Split the string with underscore and store values in array with AWK !
more enriched_ids | grep "WP_" | awk '{split($2,a,"_"); print a[4]"_"a[5]}' #Other extraction more enriched_ids | grep "WP_" | awk '{split($2,a,"_"); print a[4]"_"a[5]}'> enriched_ids_list awk 'NR==FNR{tgts[$1]; next} $1 in tgts' enriched_ids_list result/GO.out > enriched_GO.out.xls936 days ago
