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Results for "
bed
"
Wire posts
Jit
@jit.aber
Get the fasta sequence of the coordinates http://
bed
tools.readthedocs.io/en/latest/content/tools/getfasta.html #Fasta #
Bed
#Coordinates #
Bed
tools
2649 days ago
Jit
@jit.aber
get the fasta genes using gff3 and genome.fa sequence: ~/Tools/
bed
tools2/bin/
bed
tools getfasta -fi vaga.fa -
bed
Adineta_vaga.v2.gff3 -fo Adineta_vaga_genes.fa
2335 days ago
Rahul Nayak
@rahul
Get the sequences using coordinates in
bed
file. $
bed
tools getfasta -fi input_file.fa -
bed
regions_file.
bed
#
Bed
#Extract #Sequence #
bed
tools
2278 days ago
Neelam Jha
@neelam
BAM2
BED
conversion bamTo
Bed
-i overall_exp_genome_rep1.bam > alignment.
bed
#
Bed
#bam #bamTo
Bed
#convert
2060 days ago
Abhimanyu Singh
@abhimanyu
#Intersect your
bed
data with coverage $
bed
tools genomecov -ibam aln.bam -bga | awk '$4==0' |
bed
tools intersect -a cds.
bed
-b - -f 1.0
2032 days ago
Rahul Nayak
@rahul
make a window of 60k of
bed
file. $
bed
tools makewindows -g genome -w 60000 > 60K.windows.
bed
#
bed
#bin #window
1976 days ago
Rahul Nayak
@rahul
Merge overlapping
bed
file https://
bed
tools.readthedocs.io/en/latest/content/tools/merge.html #
bed
#merge #overlapping
1976 days ago