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Results for "Mapping-based"

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• • Surabhi Chaudhary@surabhi

  

  Basics for assembly http://ged.msu.edu/angus/files/lecture4-mapping.pdf #Genome #Mapping #Assembly #PPT

  2684 days ago

• • Rahul Nayak@rahul

  

  Understanding PairedEnd(PE) mapping https://davetang.org/muse/2014/07/24/getting-started-paired-end-reads/ #PE #Paired #End #PairedEnd #Mapping #Map #Learn

  2154 days ago

• • Abhimanyu Singh@abhimanyu

  

  #BLASTCLUST - BLAST score-based single-linkage #clustering. http://nebc.nerc.ac.uk/bioinformatics/documentation/blast/blastclust.html

  2096 days ago

• • Abhimanyu Singh@abhimanyu

  

  #SSPACE Basic, SSAKE-based #Scaffolding of Pre-Assembled Contigs after Extension https://github.com/nsoranzo/sspace_basic

  2096 days ago

• • Rahul Nayak@rahul

  

  Mapping subreads https://bioconductor.org/packages/release/bioc/vignettes/Rsubread/inst/doc/SubreadUsersGuide.pdf #R

  2094 days ago

• • Jit@jit.aber

  

  Is It #Ordered Correctly? #Validating #Genome #Assemblies by Optical Mapping http://www.plantcell.org/content/30/1/7

  2016 days ago

• • Jit@jit.aber

  

  samtools mpileup -uf reference.nt mapping.bam | bcftools call -c | vcfutils.pl vcf2fq > consensus.fasta #Genome #Assembly #Reference

  1972 days ago

• • BioJoker@biojoker

  

  Genome Mapping #OneLiner https://bioinformaticsonline.com/snippets/view/39310/one-liner-for-reads-mapping

  1883 days ago

• • LEGE@lege

  

  One can evaluate the accuracy of a mapper or a SNP caller with wgsim_eval.pl that comes with the package. #Evaluate #Mapping #SNP

  1678 days ago

• • Jit@jit.aber

  

  #Improving draft #assemblies by iterative mapping and #assembly of short reads to eliminate #gaps https://genomebiology.biomedcentral.com/articles/10.1186/gb-2010-11-4-r41

  1609 days ago

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