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Results for "reference-based"

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• • Jit@jit.aber

  

  Extract reference nucleotide from BAM file: samtools view your.bam | awk '{print substr( $10, 100, 1)}' #SAM #BAM #Samtools #Tricks #NGS

  2884 days ago

• • Jit@jit.aber

  

  A perl script for mapping fasta formated sequences to multiple reference sequences using one of several alignment programs. http://seq.crg.es/download/software/Miro/doc/run_Mapping.html #Perl #Script

  2788 days ago

• • Jit@jit.aber

  

  #GC-Profile: a web-based tool for #visualizing and analyzing the #variation of #GC content in #genomic sequences https://www.ncbi.nlm.nih.gov/pmc/articles/PMC1538862/

  2645 days ago

• • Jit@jit.aber

  

  Split the bam file by chromosome. $ bamtools split -in file.bam -reference #Split #Bam #Bamtools

  2641 days ago

• • Abhimanyu Singh@abhimanyu

  

  #BLASTCLUST - BLAST score-based single-linkage #clustering. http://nebc.nerc.ac.uk/bioinformatics/documentation/blast/blastclust.html

  2060 days ago

• • Abhimanyu Singh@abhimanyu

  

  #SSPACE Basic, SSAKE-based #Scaffolding of Pre-Assembled Contigs after Extension https://github.com/nsoranzo/sspace_basic

  2060 days ago

• • Jit@jit.aber

  

  #Split the #BAM file $ /home/urbe/Tools/bamtools/bin/bamtools split -in improved3.fasta.sorted.bam -reference #bamtools

  1982 days ago

• • Jit@jit.aber

  

  samtools mpileup -uf reference.nt mapping.bam | bcftools call -c | vcfutils.pl vcf2fq > consensus.fasta #Genome #Assembly #Reference

  1935 days ago

• • Rahul Nayak@rahul

  

  Graph reference genome https://vimeo.com/184983995 #Graph #Reference #Genome #GraphRef

  1642 days ago

• • BioStar@biostar

  

  Perl References https://gist.github.com/afair/2402068 #Perl #Reference #Array #Hash

  1554 days ago

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