Results for "Genome Sequence"

Wire posts

  • Get the fasta sequence of the coordinates http://bedtools.readthedocs.io/en/latest/content/tools/getfasta.html #Fasta #Bed #Coordinates #Bedtools

    2674 days ago

  • #Extract a #sequence from #multi-fasta file: $ perl -ne 'if(/^>(\S+)/){$c=grep{/^$1$/}qw(id1 id2)}print if $c' fasta.file

    2669 days ago

  • #Random #sequence generator with #perloneliner : $ perl -e '$x=int(rand(1000)); printf( "chr1\t%s\t%s", $x, $x + 10)'

    2669 days ago

  • Genome assembly tutorial http://marinetics.org/teaching/hts/Assembly.html #assembly #Tutorial #MIRA #IonTorrent

    2651 days ago

  • Plotting alignment genome.crg.es/software/gfftools/GFF2APLOT.html #Alignment #Plot #Genome #gff #gfftools

    2645 days ago

  • Interesting PPT on cancer genomics https://www.genome.gov/multimedia/slides/genomicsinmedicine2013-2014/helman_6-7-2013.pdf

    2631 days ago

  • Genome of interest Bacillus amyloliquefaciens https://www.ncbi.nlm.nih.gov/genome/genomes/848 #Bacteria

    2606 days ago

  • #Genome #submission to #GenBank https://www.ncbi.nlm.nih.gov/genbank/genomesubmit/

    2598 days ago

  • NCBI genome download ftp://ftp.ncbi.nlm.nih.gov/pub/factsheets/HowTo_Downloading_Genomic_Data.pdf #Download #NCBI

    2591 days ago

  • Unmasking the lower case values in genome. $ perl -pe '/^[^>]/ and $_=uc' genomic.fna > genomic.unmasked.fna #Genome #Unmask #Perl #Oneliner

    2582 days ago