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• • Jit@jit.aber

  

  Remove unwanted character from fasta file. $ sed -e '/^[^>]/s/[^ATGCatgc]/N/g' file.fa #IUPAC #Special #Character #Remove

  2527 days ago

• • Jit@jit.aber

  

  Reasonably fast method to compute the #patristic #distance between a pair of #species in a large tree http://blog.phytools.org/2015/10/new-reasonably-fast-method-to-compute.html

  2519 days ago

• • Neel@neelam

  

  Replace space with tab. $ awk -v OFS="\t" '$1=$1' file1 #tab #space #replace #awk

  2519 days ago

• • Neel@neelam

  

  Scripts for Phylogenetics at https://github.com/gigascience/paper-jarvis2014 #Phylogenetics #Script #Perl

  2518 days ago

• • Rahul Nayak@rahul

  

  Toy example comparing several MSA algorithms http://wiki.bits.vib.be/index.php/Multiple_sequence_alignment #Alignment #MSA #Algorithms

  2518 days ago

• • Jit@jit.aber

  

  Sort a file with column 2: sort -g -k 2,2 allPacbio.fa.fai > sorted.fai #sort #file #column

  2426 days ago

• • Jit@jit.aber

  

  Comparison of the two major classes of #assembly algorithms: overlap–layout–consensus and de-bruijn-graph https://academic.oup.com/bfg/article/11/1/25/191455

  2424 days ago

• • Jit@jit.aber

  

  #Algorithms for computing parsimonious #evolutionary scenarios for genome evolution: https://bmcevolbiol.biomedcentral.com/articles/10.1186/1471-2148-3-2

  2422 days ago

• • Jit@jit.aber

  

  #Error filtering, pair assembly and error #correction for next-generation sequencing #reads https://academic.oup.com/bioinformatics/article/31/21/3476/194979

  2399 days ago

• • Rahul Agarwal@raag

  

  All R packages for time series analysis- https://cran.r-project.org/web/views/TimeSeries.html

  2394 days ago

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