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Results for "CA"

Wire posts

  • Jit

    Example commands to remove lower-case masking: perl -pe '/^[^>]/ and $_=uc' genomic.fna > genomic.unmasked.fna

    2421 days ago

  • Neel

    3D-Jury: a simple approach to improve protein structure predictions #Protein #Predict #Structure https://academic.oup.com/bioinformatics/article/19/8/1015/235399

    2420 days ago

  • Archana Malhotra

    Understanding MinION data https://porecamp.github.io/2016/tutorials/PoreCamp2016-02-MinIONData.pdf #data #understand #learn

    2411 days ago

  • BioStar

    Senior bioinformatics scientist at NIPGR http://www.nipgr.ac.in/careers/vacancies_latest.php#vacancy2

    1442 days ago

  • Surabhi Chaudhary

    Remove the unwanted characters from Fasta file: sed -e '/^[^>]/s/[^ATGCatgc]/N/g' infile.fa #sed #unwanted #illegal #remove #correct #fasta #linux

    2401 days ago

  • Jit

    #Error filtering, pair assembly and error #correction for next-generation sequencing #reads https://academic.oup.com/bioinformatics/article/31/21/3476/194979

    2399 days ago

  • Poonam Mahapatra

    Remove duplicate fasta ids: awk '/^>/{f=!d[$1];d[$1]=1}f' in.fa > out.fa #duplicate #fasta #ids

    2394 days ago

  • Jit

    #Remove a #sequence by id from multifasta: cat vaga.fa | awk '{if (substr($0,1) == ">scaffold_1 1087316 bp") censor=1; else if (substr($0,1,1) == ">") censor=0; if (censor==0) print $0}' > fixed.fasta

    2391 days ago

  • BioStar

    Filtration https://github.com/CGRL-QB3-UCBerkeley/denovoTargetCapturePopGen/blob/master/2-ScrubReads

    2371 days ago

  • Rahul Agarwal

    Nice Short Review-Disease Biomarkers for Precision Medicine: https://www.ncbi.nlm.nih.gov/pmc/articles/PMC5414969/ #Omics #Cancer #PrecisionMedice

    2369 days ago

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