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Results for "PE"

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• • Jit@jit.aber

  

  perl -pe 's/[^AGTC\n]/N/gi unless m/>/;' /media/urbe/TOSHIBALAB/falconUnzip/SSPACED_P2/scaffolds.fasta > /media/urbe/TOSHIBALAB/falconUnzip/SSPACED_P2/scaffolds_corrected.fasta #Remove #Non-ATCG

  2201 days ago

• • Jit@jit.aber

  

  perl -e '$/="\n>"; while (<>) { s/>//g; my ($id, $seq) = split /\n/; print ">$_" if length $seq; }' < all_p_ctg.fasta > all_p_ctg_corrected.fasta #Convert #Fasta #Zero

  2197 days ago

• • Jit@jit.aber

  

  #tBLASTn #command line $ tblastn -query Avaga.pep.out.45.fa -db myDB -outfmt 6 -out output_file -evalue 1e-5 -max_target_seqs 1 #Blast #Protein

  2197 days ago

• • Jit@jit.aber

  

  Unmask lowercase. perl -pe '/^[^>]/ and $_=uc' genomic.fna > genomic.unmasked.fna #LowerCase #Unmask

  2185 days ago

• • Jit@jit.aber

  

  Replace lowercase to N. perl -pe '/^[^>]/ and $_=~ s/[a-z]/N/g' genomic.fna > genomic.N-masked.fna #Mask #Lowecase2N #LowerCase

  2185 days ago

• • Rahul Nayak@rahul

  

  Understanding PairedEnd(PE) mapping https://davetang.org/muse/2014/07/24/getting-started-paired-end-reads/ #PE #Paired #End #PairedEnd #Mapping #Map #Learn

  2157 days ago

• • Jit@jit.aber

  

  perl -pe '/^>/ ? print "\n" : chomp' LR.fasta | tail -n +2 > out.fasta #singleLine #Multifasta #Multi2Single

  2154 days ago

• • Rahul Nayak@rahul

  

  Multi-line fasta to single line fasta $ perl -pe '/^>/ ? print "\n" : chomp' in.fasta | tail -n +2 > out.fasta #Multiline #Singleline #Fasta

  2127 days ago

• • BioStar@biostar

  

  Computational Biology and Bioinformatics in Nigeria https://www.ncbi.nlm.nih.gov/pmc/articles/PMC3998874/ #Nigeria #Bioinformatics #Scope

  2127 days ago

• • Jit@jit.aber

  

  http://loupe.10xgenomics.com #10XGenomics #10X #Phase #Haplotype #View

  2113 days ago

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