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• • BioJoker@biojoker

  

  Print the lqst line of the file zith Perl. $ perl -ne 'END {print $last} $last= $_ if /\S/' blocks_coords.gff #Last #Line #Perl

  1806 days ago

• • Jit@jit.aber

  

  #GFA to #FASTA file conversion. awk '/^S/{print ">"$2"\n"$3}' in.gfa | fold > out.fa

  2333 days ago

• • Jit@jit.aber

  

  #GFA to #Fasta file conversion. $ grep '^S' example.gfa |awk '{print ">"$2; print $3}' > example.fa

  2326 days ago

• • Rahul Nayak@rahul

  

  #Convert #fasta file to uppercase/lowercase, without altering the annotation line $ awk '{ if ($0 !~ />/) {print toupper($0)} else {print $0} }' name.fasta

  2287 days ago

• • Jit@jit.aber

  

  Append to the file name. $ for filename in *.scf; do mv "$filename" "H_$filename"; done; #append #mv #rename

  2284 days ago

• • Rahul Nayak@rahul

  

  Get the sequences using coordinates in bed file. $ bedtools getfasta -fi input_file.fa -bed regions_file.bed #Bed #Extract #Sequence #bedtools

  2296 days ago

• • Jit@jit.aber

  

  Find matching file names with pattern in a directory. $ ls -dq *_name2search_* | wc -l #file #search #hits #pattern #names #directory

  2289 days ago

• • Manisha Mishra@manisha

  

  Extract fasta with Ids. $ perl -ne 'if(/^>(\S+)/){$c=grep{/^$1$/}qw(id1 id2)}print if $c' fasta.file #extract #fasta #sequence #ids

  2261 days ago

• • Neel@neelam

  

  Bioinformatics job at Naotia University https://drive.google.com/file/d/0B0Y1Fpxmzyd3OHQ3aUNYa3hZY2c/view?pref=2&pli=1 #Job #Neotia #Professor

  2243 days ago

• • Jit@jit.aber

  

  #Multiline Fasta To #SingleLine Fasta $ awk '/^>/ {printf("\n%s\n",$0);next; } { printf("%s",$0);} END {printf("\n");}' < file.fa

  2129 days ago

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