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• • Jit@jit.aber

  

  #Target 4 and #HSPS 1 with #blast $ blastn -task megablast -query brkSeq.fa -db myDBAvaga -evalue 1e-5 -num_threads 1 -max_target_seqs 4 -max_hsps 1 -outfmt '6' -out output

  2576 days ago

• • Jit@jit.aber

  

  NCBI genome download ftp://ftp.ncbi.nlm.nih.gov/pub/factsheets/HowTo_Downloading_Genomic_Data.pdf #Download #NCBI

  2564 days ago

• • Jit@jit.aber

  

  Find the memory to request on server for 2 TB and 24 cores: 2*1024*1024/24 ~= 85000 MB #CPU #Server #Herculus #Memory

  2547 days ago

• • Jit@jit.aber

  

  Reasonably fast method to compute the #patristic #distance between a pair of #species in a large tree http://blog.phytools.org/2015/10/new-reasonably-fast-method-to-compute.html

  2495 days ago

• • Jit@jit.aber

  

  #Algorithms for computing parsimonious #evolutionary scenarios for genome evolution: https://bmcevolbiol.biomedcentral.com/articles/10.1186/1471-2148-3-2

  2397 days ago

• • Radha Agarkar@radhaagarkar

  

  Remove the fasta with zero size: awk 'BEGIN {RS = ">" ; FS = "\n" ; ORS = ""} $2 {print ">"$0}' input.fas > output.fas #fasta #remove

  2377 days ago

• • Rahul Agarwal@raag

  

  iSeq 100-compact benchtop system https://www.genengnews.com/gen-news-highlights/illuminas-push-to-democratize-genomics-with-the-iseq-100/81255358 #NGS #NewMachine #Illumina

  2338 days ago

• • Jit@jit.aber

  

  samtools view -f 256 Input.bam | awk '$6 ~/S/ && $7 == "=" {print $0}' > Secondary_clipped.sam

  2326 days ago

• • Rahul Agarwal@raag

  

  Learn D3.js - https://leanpub.com/D3-Tips-and-Tricks/read #D3dotJS #visualisation #plot

  2322 days ago

• • Rahul Nayak@rahul

  

  Get the sequences using coordinates in bed file. $ bedtools getfasta -fi input_file.fa -bed regions_file.bed #Bed #Extract #Sequence #bedtools

  2276 days ago

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