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Results for "Sequence Analysis"

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• • Rahul Agarwal@raag

  

  List of excellent scRNA-seq analysis tools- https://github.com/seandavi/awesome-single-cell

  2366 days ago

• • Neelam Jha@neelam

  

  Reformat you fasta sequence with size. $ seqkit seq -w 50 allGenomeContacted.fa > allGenomeContacted_final.fa #Reformat #Fasta #Size

  2496 days ago

• • Jit@jit.aber

  

  #Phylogenetics #analysis https://bip.weizmann.ac.il/education/course/introbioinfo/03/lect12/phylogenetics.pdf

  2492 days ago

• • Rahul Agarwal@raag

  

  All R packages for time series analysis- https://cran.r-project.org/web/views/TimeSeries.html

  2365 days ago

• • Jit@jit.aber

  

  #Remove a #sequence by id from multifasta: cat vaga.fa | awk '{if (substr($0,1) == ">scaffold_1 1087316 bp") censor=1; else if (substr($0,1,1) == ">") censor=0; if (censor==0) print $0}' > fixed.fasta

  2362 days ago

• • Jit@jit.aber

  

  Beginner’s guide to comparative bacterial genome analysis using next-generation sequence data https://www.ncbi.nlm.nih.gov/pmc/articles/PMC3630013/ #Bacteria #NGS #Comparative #Genomics

  2359 days ago

• • Rahul Agarwal@raag

  

  Network-guided GWAS Analysis-http://giant.princeton.edu/gwas/create_new #GWAS #Phenotype #Genetics #Disease

  2340 days ago

• • Jit@jit.aber

  

  get the fasta genes using gff3 and genome.fa sequence: ~/Tools/bedtools2/bin/bedtools getfasta -fi vaga.fa -bed Adineta_vaga.v2.gff3 -fo Adineta_vaga_genes.fa

  2329 days ago

• • Rahul Nayak@rahul

  

  Get the sequences using coordinates in bed file. $ bedtools getfasta -fi input_file.fa -bed regions_file.bed #Bed #Extract #Sequence #bedtools

  2271 days ago

• • Manisha Mishra@manisha

  

  Extract fasta with Ids. $ perl -ne 'if(/^>(\S+)/){$c=grep{/^$1$/}qw(id1 id2)}print if $c' fasta.file #extract #fasta #sequence #ids

  2237 days ago

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