transAlign: using amino acids to facilitate the multiple alignment of protein-coding DNA sequences http://www.biomedcentral.com/1471-2105/6/156/ #Align #Genome
AlienTrimmer: A tool to quickly and accurately trim off multiple short contaminant sequences from high-throughput sequencing reads http://www.sciencedirect.com/science/article/pii/S0888754313001481
ECR Browser: a tool for visualizing and accessing data from comparisons of multiple vertebrate genomes http://nar.oxfordjournals.org/content/32/suppl_2/W280.short #Browser #Visualization #Genome #Synt