2905 days ago
FMLRC: a long-read error correction tool using the multi-string Burrows Wheeler Transform
FMLRC, or FM-index Long Read Corrector, is a tool for performing hybrid correction of long read sequencing using the BWT and FM-index of short-read sequencing data. Giv...2131 days ago
Useful Publications and Websites for Deep Sequencing Data Analysis
...sequence reads in FASTQ format. Deorowicz & Grabowski, Bioinformatics 27(6):860-2, 2011. PubMed Fast and accurate short read alignment with Burrows-Wheeler transform. Li & D...3816 days ago
Next generation sequencing in R or bioconductor environment
...y becoming a universal standard alignment format, and is now supported by a wide variety of alignment tools. Documentation Samtools Website BWA (Burrows-Wheeler Alignment) Website &...3661 days ago
Comment on "Bioinformatics Algorithm Demonstrations and Tutorials"
Burrows Wheeler transform in animation http://www.homolog.us/animation/3640 days ago
Comment on "Commercial and public next-gen-seq (NGS) software"
...ics.org.cn/SeqMaq: http://biogibbs.stanford.edu/~jiangh/SeqMap/Bowtie: http://bowtie-bio.sourceforge.net/Novoalign: http://www.novocraft.comBWA - Burrows-Wheeler Alignment Tool: http:...3659 days ago