Results for "Genome"
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Our basic strategy in building homology maps is to use exons that are orthologous in multiple genomes as map "anchors." Given K genomes, the steps in the map construction are as follows: For each genome, obtain a set of exon annotations. These annotations can be a combination of both exon pred...Tags: Bioinformatics, Analysis, Genome, Mercator
2701 days ago
- The hive plot is a rational visualization method for drawing networks. Nodes are mapped to and positioned on radially distributed linear axes — this mapping is based on network structural properties. Edges are drawn as curved links. Simple and interpretable. The purpose of the hi...
Tags: Bioinformatics, Analysis, Assembly, Genome, Visialization, Tool, View, Hive, Plot, HivePlot
2691 days ago
- ABACAS is intended to rapidly contiguate (align, order, orientate) , visualize and design primers to close gaps on shotgun assembled contigs based on a reference sequence. It uses MUMmer to find alignment positions and identify syntenies of assembly contigs against the reference. The output is th...
Tags: Bioinformatics, Analysis, Assembly, Genome, ABACAS, Plot, View
2691 days ago
- BRIG is a free cross-platform (Windows/Mac/Unix) application that can display circular comparisons between a large number of genomes, with a focus on handling genome assembly data. The application is available at:http://sourceforge.net/projects/brig If you have any questions or comments, post th...
Tags: Bioinformatics, Analysis, Assembly, Genome, BRIG, Plot, View, BLAST
2691 days ago
- GenomeComp is a tool for summarizing, parsing and visualizing the genome wide sequence comparison results derived from voluminous BLAST textual output, so as to locate the rearrangements, insertions or deletions of genome segments between species or strains.It can be easily used to compare, parsi...
Tags: Bioinformatics, Alignment, NGS, Visualize, See, View, Genome, chromosome, GenomeComp
2690 days ago
- This sockeye software uses the Ensembl database project to import sequence and annotation information from several eukaryotic species. A user can additionally import their own custom sequence and annotation data. Individual annotation objects are displayed in Sockeye by using custom 3D model...
Tags: Bioinformatics, Alignment, NGS, Visualize, See, View, Genome, chromosome, sockeye, 3D
2690 days ago
Can you recommend me some interactive tools to visualize chromosomes?
I am looking for new, interactive and user friendly tools to see chromosomal rearrangements. I tried IGV, but it does not seems to be very helpful for chromosomal rearrangements visualization. Circos look pretty useless, as it does not allow me to explore well. Help Please...Tags: Bioinformatics, Visualize, Chromosome, See, View, Genome, Tools
2690 days ago
- Circos plot tool (J-Circos) that is an interactive visualization tool that can plot Circos figures, as well as being able to dynamically add data to the figure, and providing information for specific data points using mouse hover display and zoom in/out functions. J-Circos uses the Java computer ...
Tags: Bioinformatics, Alignment, NGS, Visualize, See, View, Genome, chromosome, J-Circos
2690 days ago
- Cgaln (Coarse grained alignment) is a program designed to align a pair of whole genomic sequences of not only bacteria but also entire chromosomes of vertebrates on a nominal desktop computer. Cgaln performs an alignment job in two steps, at the block level and then at the nucleotide level. The f...
Tags: Bioinformatics, Cgaln, Alignment, Genome
2685 days ago
