Comment on "Run miniasm assembler on nanopore reads !"
Here’s the quick and dirty of what was done: 1 Run minimap: This uses a pre-b...nate them into a single file prior to running minimap. minim...tep. The code below is taken from the example provided in the...he fist step. These mappings are required for Racon assembly...2228 days ago
Comment on "poRe: an R package for the visualization and analysis of nanopore sequencing data"
...ow need to install the poRe dependencies in R, which is very easy: R source("http://www.bioconductor.org/biocLite.R") biocLite("r....table","svDialogs")) q() R may ask if you want to instal...he 2D sequence data as FASTQ from the MinION data. Nick...2235 days ago
Comment on "SPAdes hybrid genome assembly"
...ata. SPAdes is a swiss-army knife of genome assembly tools, and by default includes read correction. This tak...sp;We will also only use 3 kmers to save time: ./SPAdes-3....eotide&id=NC_000913.3&rettype=fasta&retmode=txt"...2235 days ago
2236 days ago
Comment on "Run miniasm assembler on nanopore reads !"
...ssemble the genome using ONT (nanopore reads) Minimap and miniasm are...pping and (ii) assembly. Designed for long, noisy reads, they do no...es are contiguous (i.e. long) but very noisy (i.e. full of errors)...nvert GFA to FASTA: awk '/^S/{print ">"$2"\n"$3}' reads.gfa...2236 days ago
2242 days ago
Comment on "List of genome announcement, notes and reporting journals"
Genomics data also accept draft genome assembly papers https://www.sciencedirect.com/journal/genomics-data2243 days ago
Comment on "How to install Perl modules on Mac OS X in easy steps !!"
Our Perl script for drawing requires the GD module(2.41 or later version). Moreover, the GD module requires the following packages. The gd graphics library The PNG graphics libraryThe zlib compression library2249 days ago
2263 days ago
Comment on "BINC (BioInformatics National Certification) Website address"
BINC 2018 http://bioinformaticsonline.com/news/view/36281/binc-bioinformatics-national-certification-examination-20182265 days ago