List of gene ontology software and tools
...who wish to analyze spectral counting data from shotgun proteomics. http://pcarvalho.com/patternlab GOssTo GOssTo and GOssToWeb are tools to calculate the semantic similarity betwe...3855 days ago
BBTools for bioinformatician !
...threads, because the insert-size average is calculated on a per-thread basis, which...ach transcript that was covered. To calculate physical coverage stats (regi...----------------------------------------- Calculate heterozygous rate for sequenc...2416 days ago
Software developed in pevsner lab
...e Patterns in Trios SNPscan: Data Analysis and Visualization of SNP Data pediSNP: Analyze SNP Data From a Pedigree of Two Generations kcoeff: Calculate Cotterman Coefficients of SNP...3644 days ago
3124 days ago
2297 days ago
Most Commonly used Awk by Bioinformatician
...80th: awk 'NR>=20&&NR<=80' input.txt > output.txt calculate the average of column 2: awk...rint x/NR}' input.txt regex (egrep): awk '/^test[0-9]+/' input.txt calculate the sum of column 2 and 3 and...4058 days ago
List of In-silico Binding Site Prediction Tools
...ular surface model (Connolly's surface), all calculated analytically. CASTp can be u...the query. Structural similarity scores are calculated for the query protein's surf...It is designed to analyze proteins channels, calculate pore dimensions and analyze a...3890 days ago
3063 days ago
Count the frequency of base G in a given DNA sequence
...bin/perl use strict; use warnings; my $DNA = "GATTACACAT"; #initialize $countG and $currentPos my $countG = 0; my $currentPos = 0; #calculate the length of $DNA my $DNAle...3063 days ago