LiftOver is a necesary step to bring all gene...nalysis to the same reference build. LiftOver can have three use cases:
(1...umber over different versions
Run:
liftOver input.bed hg18ToHg19.over.cha...ase in an exon
For example:
If you liftOver chr4:6497-6497 from hg19 to G...
Convenient conversions between genome assemblie. The liftover package makes it easy to remap genomic coordinates to a different genome assembly.
More at https://github.com/aaronwolen/liftover
https://www.bioconductor.org/help/workflows/liftOver/
...t;> mm10 (GRCm38)).
It supports most commonly used file formats including SAM/BAM, Wiggle/BigWig, BED, GFF/GTF, VCF.
CrossMap is designed to liftover genome coordinates between as...