Results for "mappings"
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Comment on "REAPR: a universal tool for genome assembly evaluation"
...;assembler>_perfect. This should take about a minute. The next tool we need is reapr smaltmap which creates a bam file of read-pair mappings. Do the same thing you did wi...1516 days ago
- ...filter_mode <value> filter modes in mashmap: 'map', 'one-to-one' or 'none' [default: map] 'map' computes best mappings for each query sequence 'one-to-one' computes best mappings for query as well as referenc...
2302 days ago
Comment on "Run miniasm assembler on nanopore reads !"
...ads back to the contigs (the PAF file) created in the fist step. These mappings are required for Racon assemb...-t 24 \ 20170911_oly_pacbio_cat.fastq \ 20170918_oly_pacbio_minimap_mappings.paf \ 20170918_oly_pacbio_mi...2347 days ago
Comment on "Run miniasm assembler on nanopore reads !"
...ec; CPU: 67037.124 securbe@urbo214b[allONT] ~/Tools/miniasm/miniasm -f both.fastq AONT.paf > AONT.gfa [][M::main] ===> Step 1: reading read mappings <===[M::ma_hit_read::107.5...2460 days ago
Comment on "GraphMap - A highly sensitive and accurate mapper for long, error-prone reads"
...mapping positions within the given fraction of the top score will be counted for ambiguity (mapping quality). Value of 0.0 counts only identical mappings. [0.02] -Z, --secondary - If...2472 days ago
