Tags: Bioinformatics, Analysis, NGS, VirMet, Genome, MetaGenome
2804 days ago
Tags: Bioinformatics, Analysis, NGS, PHYMMBL, Genome, MetaGenome, Classification, Reads
2804 days ago
GroopM: Metagenomic binning toolset
GroopM is a metagenomic binning toolset. It leverages spatio-temoraldynamics (differential coverage) to accurately (and almost automatically)extract population genomes from multi-sample metagenomic datasets. GroopM is largely parameter-free. Use: groopm -h for more info. For installation and us...Tags: Bioinformatics, Analysis, Assembly, Genome, GroopM, Metagenome, Binning
2656 days ago
Tags: Bioinformatics, Analysis, Assembly, Genome, Multigenome, Metagenome, Filter
2649 days ago
Metagenomics assembly workshop !!
Welcome to the one-day metagenomics assembly workshop. This tutorial will guide you through the typical steps of metagenome assembly and binning. The Tutorial Data Set FastQC Quality Control Assembly Velvet Assembly MEGAHIT Assembly IDBA-UD Assembly Ray Assembly Gene Predi...Tags: Bioinformatics, Metagenome, Workshop, Tutorial
2614 days ago
SciLifeLab tutorial for bioinformatics analysis !
SciLifeLab is a national center for molecular biosciences with focus on health and environmental research. Courses Old courses (2012-2014) Metagenomics Workshop 2015 November - Uppsala2016 November - Uppsala2017 November - Uppsala Introduction to Bioinformatics Using NGS Data 2015 February ...Tags: Bioinformatics, Tutorial, SciLifeLab, Genome, Metagenome, Cources
2250 days ago
Omega2: metagenome assembly pipeline
Omega found overlaps between reads using a prefix/suffix hash table. The overlap graph of reads was simplified by removing transitive edges and trimming short branches. Unitigs were generated based on minimum cost flow analysis of the overlap graph and then merged to contigs and scaffolds using m...Tags: Omega2, metagenome, assembly, pipeline
2531 days ago
Tags: multiprocess, distributed, memory, overlap, layout, consensus, OLC, metagenome, assembler
2531 days ago
Tags: GOLD, Genomes, Online, Database, comprehensive, access, information, genome, metagenome, sequencing, projects, metadata
2515 days ago