Results for "PERL"
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Comment on "Installing Bio::SCF perl module"
In Ubuntu, you can try the following command to install perl packages: sudo apt-get install libbio-scf-perlsudo apt-get install -y bioperlsudo apt-get install -y libstatistics-distributions-perlsudo apt-get install -y libterm-progressbar-simple-perl1691 days ago
Comment on "Installing Bio::SCF perl module"
The module is updated https://launchpad.net/ubuntu/+source/libbio-scf-perl You can install it in Ubuntu as follows: sudo apt-get install libbio-scf-perl Dont forgot to install all deps first.1691 days ago
Comment on "The Raku Programming Language"
Install Raku wget https://rakudo.perl6.org/downloads/star/rakudo-star-2019.03.tar.gz tar xfz rakudo-star-2019.03.tar.gz cd rakudo-star-2019.03 perl Configure.pl --gen-moar --make-install --prefix ~/rakudo say 'Hello World'; # Hello World1738 days ago
Comment on "Perl6 script to count ATGC !"
Yes, indeed intersting but complex script script in Perl v6 More at https://examples.p6c.dev/categories/rosalind.html1739 days ago
Comment on "Retrieving Taxonomic Information with R"
Perl solution to the problem https://metacpan.org/pod/Bio::Taxon1890 days ago
Comment on "Extract fasta sequence from a multifasta file with fasta header Ids"
perl -ne 'if(/^>(\S+)/){$c=grep{/^$1$/}qw(id1 id2)}print if $c' fasta.file If yo...ence identifier per line in the file ids.file, then you can use this one line: perl -ne 'if(/^>(\S+)/){$c=$i{$...2090 days ago
Comment on "Perl one-liner for bioinformatician !!!"
This tutorial is useful https://blogs.oracle.com/linux/the-top-10-tricks-of-perl-one-liners-v22135 days ago
Comment on "Installing Perl environment on Linux"
You migth need to install this sudo conda install -c bioconda perl-app-cpanminus2305 days ago
Comment on "Installing Perl environment on Linux"
...ter) ✗ conda create -n myLocalPerl perl perl-app-cpanminusSolving env...-5.22.0 | 10 11.2 MB bioconda perl-app-cpanminus-1.7039 | 2 220...istributions installed(myLocalPerl) ➜ parallelLastz git:(master)...t-0.35Building and testing BioPerl-1.007002 ... OKSuccessfully i...2305 days ago
Comment on "Installing Perl environment on Linux"
curl -L http://cpanmin.us | perl - --sudo App::cpanminus The above is installing the "zero configuration CPAN modules installer" called cpanm. (Can take several minutes to install - don't break the process) and after - simply: cpanm Foo cpanm Module::One cpanm Another::Module2305 days ago
