Comment on "Extract fasta sequence from a multifasta file with fasta header Ids"
...hen you most likely have the sequence identifiers in a separate file. Assuming that you have one sequence identifier per line in the file ids.file, then you can use this one line: perl -ne 'if(/^>(\S+)/){...1964 days ago
2177 days ago
Comment on "Installing Perl environment on Linux"
...calPerl/lib/5.26.2/x86_64-linux-thread-multi /home/urbe/anaconda3/envs/myLocalPerl/lib/5.26.2 .) at parallelLastz.pl line 10.BEGIN failed--compilation aborted at parallelLastz.pl line 10.(myLocalPerl) ➜ parallelLa...2180 days ago
Comment on "poRe: an R package for the visualization and analysis of nanopore sequencing data"
...sp;We need to download poRe from sourecforge and we are using version 0.16 Once downloaded, and back at the Linux command line: R CMD INSTALL poRe_0.16.t...2228 days ago
Comment on "GraphMap - A highly sensitive and accurate mapper for long, error-prone reads"
...-b, --verbose-sam INT Helpful debug comments can be placed in SAM output lines (at the end). Comments can b...rease/decrease verbosity level. 0 - verbose off 1 - server mode, command line will be omitted to obfuscate...2346 days ago
Comment on "Most Commonly used Awk by Bioinformatician"
Print line of a tab-delimited file when the 8th field is 10090:awk -F "\t" '$8 == 10090 { print $0 }' myFilePrint fields 1, 2, 3 from a tab-delimited file where the 4th field contains a '99':awk -F "\t" '$4 ~ /99/ {print $1"\t"$2"\t"$3}' myFile3763 days ago
Comment on "Online Bioinformatics Courses"
Australian bioinformatics networks n Santa Fe Institute will be launching a series of MOOCs (Massive Open On-line Courses), covering the field of complex systems science. More at http://australianbioinformatics.net/study/#.UhF3D5K2Ouk3967 days ago