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Comment on "Run miniasm assembler on nanopore reads !"
Must read paper https://genome.cshlp.org/content/27/5/737.full2220 days ago
Comment on "SPAdes hybrid genome assembly"
use SPAdes to assemble the data. SPAdes is a swiss-army knife of genome assembly tools, and by default includes read correction. This takes up lots of RA...2227 days ago
Comment on "Run miniasm assembler on nanopore reads !"
urbe@urbo214b[allONT] minimap2 -xava-ont both.fastq both.fastq -t20 -X > AONT.paf [][M::mm_idx_gen::107.693*1.96] collected minimizers[M::mm_idx_gen::117.963*3.34] sort...2334 days ago
Comment on "GraphMap - A highly sensitive and accurate mapper for long, error-prone reads"
urbe@urbo214b[genome] graphmap align -h []GraphMap - A very accurate and sensitive long-read, high error-rate sequence mapperGraphMap Version: v0.5.2Build date: Jun 6 2017...2345 days ago
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Comment on "Various scholarships around the world !!"
The Polonsky Academy at the Van Leer Jerusalem Institute will award up to six Polonsky Postdoctoral Fellowships in the humanities or social sciences for up to five years,...2714 days ago
Comment on "Structural variation: the hidden genomic treasure"
I like this tool GRIDSS: the genomic rearrangement identification software suite. A high-speed next-gen sequencing structural variation caller. GRIDSS calls vari...2755 days ago