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Comment on "Genome Assembly Tutorial"
This totorial is also very informative http://www.imperial.ac.uk/bioinformatics-data-science-group/resources/software/next-generation-sequencing-ngs-software/de-novo-assembly/2873 days ago
Comment on "Structural variation: the hidden genomic treasure"
This research paper is also useful http://www.sciencedirect.com/science/article/pii/S10462023163001842874 days ago
Comment on "Tools to detect synteny blocks regions among multiple genomes"
R package to Finds Synteny in a Sequence Database http://origin.rdrr.io/bioc/DECIPHER/man/FindSynteny.html2877 days ago
Comment on "QUAST: quality assessment tool for genome assemblies"
You can also try LAZER, it produces the same evaluation as Quast but is 5.6 times faster and use half the memory http://www.csd.uwo.ca/~ilie/LASER/2878 days ago
Comment on "List of Bioinformatics Vacancy, Jobs, Opportunity websites"
Thanks for the extensive list of Bioinformatics job portals. I also love to share https://www.jobvector.com/search-jobs.html?keywords=Bioinformatics&locations=&_pn=1&sort=_score job portal for bioinformatician.2879 days ago
Comment on "Structural variation: the hidden genomic treasure"
PhD thesis and useful material on Structure Variation http://paduaresearch.cab.unipd.it/4930/1/tesi_dottorato_versione_finale.pdf2882 days ago
Comment on "Structural variation: the hidden genomic treasure"
Hydra-SV The pipeline described below is meant to convey a general approach that they have found to be effective for discovering SV breakpoints...it should be noted that this approach seeks to discover breakpoint...e.com/archive/p/hydra-sv/wikis/TypicalWorkflow.wiki GitHub h...2882 days ago
Comment on "Structural variation: the hidden genomic treasure"
This paper https://www.ncbi.nlm.nih.gov/pmc/articles/PMC4479793/ provide many others tools and their comparative importance.2882 days ago
Comment on "Structural variation: the hidden genomic treasure"
I like this tool GRIDSS: the genomic rearrangement identification software suite. A high-speed next-gen sequencing structural variation caller. GRIDSS call...h break-end assembly, split read, and read pair evidence. https://github.com/Papenfu...2882 days ago
- Velvet advicer http://dna.med.monash.edu.au/~torsten/velvet_advisor/
2884 days ago
