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CovCal: Coverage / Read Count Calculator
Coverage / Read Count Calculator Calculate how much sequencing you need to hit a target depth of coverage (or vice versa). Instructions: set the read length/config...2177 days ago
CNIDARIA: fast, reference-free phylogenomic clustering
...size or phylogenetic distances. We successfully simultaneously clustered 169 genomic and transcriptomic datasets from 4 kingdoms, achieving 100% accuracy at supra-species...2891 days ago
- ...ics data. Please find the methods paper here: https://peerj.com/articles/1319/ Anvi’o would not hav...http://merenlab.org/projects/anvio Paper https://peerj.com/articles/1839/
2891 days ago
- ...hin R, enter citation("clusterProfiler")):Yu G, Wang L, Han Y and He Q (2012). “clusterProfiler: an...emes among gene clusters.” OMICS: A Journal of Integrative Biology, 16(5), pp. 284-287.Installation...
2891 days ago
- ...am, primer, tutorial, how-to, introductionRevisions 1.0: May 30, 2013: First public release on bio...ng: Updated to use samtools 1.1 and bcftools 1.2. &nbs...
2885 days ago
- ...le on Linux, UNIX, MAC OS and Windows platforms. Currently CSBB provides 13 modules focused on analytica...m different platforms. More at https://github.com/skygenomics/CSBB-v1.0
2879 days ago
- ...k theory approaches for the analysis of chromatin interaction datasets. To fill this gap, we developed a web-based application, QuIN, which enables: 1) building and visualizing chr...
2880 days ago
Kraken: ultrafast metagenomic sequence classification using exact alignments
...k-mers, Kraken achieves classification accuracy comparable to the fastest BLAST program. In its fastest mode, Kraken classifies 100 base pair reads at a rate of over 4.1 million reads per minute, 909...2880 days ago
- ...wing mismatches in the protein alignment. The search can process up to millions of reads per minute using, for example, only 10 GB RAM with a protein database comprising 4821 microbial genomes. Kaiju can...
2880 days ago
- The greengenes web application provides access to the 2011 version of the greengenes 16S rRNA gene sequence alignment for browsing, blasting, probing, and downloading. The data and...
2878 days ago
