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...st begin with a letter (e.g. 'A', 'A0', 'A-0') and can only contain letters, numbers and _. No punctuation! Maximum row + column total is 150 — if exceeded, rows a...2814 days ago
GAGE : Genome Assembly Gold-standard Evaluation
...e journal Genome Research: GAGE: A critical evaluation of genome assemblies and assembly algorithms. http://genome.cshlp.org/content/early/2012/01/12/gr.131383.1112809 days ago
OPERA : Optimal Paired-End Read Assembler
...to minimize the discordance of scaffolds with the information provided by the paired-end/mate-pair/long reads (for further details see Gao et al, 2011). Note that since the origin...2807 days ago
- ...t is inspired by the string graph assembler (Simpson and Durbin, 2010 and 2012) and has a similar workflow....sses can be resumed. Here is an example:run-fermi.pl -dAPe ./fermi -p NA12878 -t16 -f18 reads*.fq.gz &g...
2807 days ago
- ...All browsing and interaction with Strudel happens in real-time – there is no need to wait while the maps are generated. It is built using Java 1.6 and ships with its own JRE,...
2786 days ago
- ...or alignment program that is exteremely fast (17 CPU hours for whole Human x...ith 40 nodes: 35 wall minutes), or 8 mammals in 21 CPU hours (42 wall minutes))...MPI) memory efficient. (Even a single node with 16GB of ram can handle over 1Gb...
2786 days ago
- ...nsist of one or multiple breakpoints. The Syntax (shown above the table) gives a detailed description of the variant and its location (e.g. chr11:g.36585230_76606619del, a del...
2784 days ago
- ...gh elements acquired by horizontal gene transfers and not constricted by hierarchical structures. More at https://www.youtube.com/watch?v=vdGuy1GAJrQ
2779 days ago
- ...than previous technologies. Methods for classifying sequences as short as 100 base pairs (bp) have until...mically classify DNA sequences, can accurately classify reads as short as 100 bp. Its accuracy for short...
2776 days ago
- ...hile allowing detailed inspection of individual reads (Supplementary Note 1). For example, here we show a...gene fusion in the SK-BR-3 breast cancer cell line linking the genes CYTH1 and EIF3H. While it has been...
2765 days ago
