3914 days ago
Structure of Binary files used for storing sequencing data-bam and sff
...th maximum information content. Link for those who looking for structure of Bam and sff file: Bam: http://samtools.sourceforge.net/SAMv1.pdf (from page 12) sff file (for Ion torrent...3914 days ago
Best book Titles for Learning Bionformatics
...Thomas Lengauer (Editor), 2001, John Wiley & Sons Stati...nis Elliott Shasha (Editors), 1999, Oxford Univ Press Time W...Andrew P. Read, Tom Strachan 1999, BIOS Scientific Publisher...ds C., Venter J.C. (Editors), 1994, Academic Press ...3912 days ago
Great Place to Study Bioinformatics in Europe
...euven, Belgium http://onderwijsaanbod.kuleuven.be/opleidingen/e/CQ_50269018.htm ETH, Zurich http://www...https://studyinsweden.se/programmes/?query=bioinformatics&period=ht-2016&level=ma&subject=nat...3026 days ago
Most Commonly used Awk by Bioinformatician
...um of column 2 and 3 and put it at the end of a row or replace the first column: awk '{print $0,$2+$3}' input.txt awk '{$1=$2+$3;print}' input.txt join two files on column 1: awk 'BEGIN{while((getline&l...3907 days ago
Hidden Markov Models, Viterbi Algorithm, Markov Chain Exploration with script
...p wise explanationand implementation steps at http://dna.cs.byu.edu/bio465/Labs/hmm.shtml Source code with explanation http://www.tannerhelland.com/1187/hidden-markov-models-viterb...3819 days ago
Useful Publications and Websites for Deep Sequencing Data Analysis
...iers in Plant Science 2:77, 2011 Full Text [equally relevant t...uml;der et al, PLoS One 5(9):e12681, 2010. PubMedCentral Co...Narlikar, Nucleic Acids Res 41:21–32, 2013 PubMed Tra...al., PLoS One 7(2): e32253, 2012. Full Text Double digest RA...3774 days ago
Bioinformatics infrastructure speed up Indian agriculture
...r sense out of huge genomic" - http://www.biospectrumindia.com/biospecindia/features/203849/supercomputing-indian-agriculture-fast-track-mode/page/13703 days ago
List of bioinformatics open source projects/software.
...//blogs.msdn.com/b/msr_er/archive/2011/10/18/microsoft-biology-found..., Gene Ontology (GO), UniRef (50,90,100), RefSeq, NCBI taxonomy, an...m that provides access to more than 150 genomic analysis tools GeW...omics data Genome Analysis Toolkit 1.0 (GATK 1.0) a software pack...3751 days ago
List of In-silico Binding Site Prediction Tools
...canonical functional surfaces of >19,000 structures in the SplitP...of 48 unbound/bound structures and 210 bound structures. The compar...//cheminfo.u-strasbg.fr:8080/scPDB/2011/db_search/about_scpdb.html&n...lgorithm written by Hendlich et al. (1997). Pocket-Finder was writte...3738 days ago