Results for "1"
Bio-Scripts
Perl script to split fasta sequence / overlaps
#!/usr/bin/perl use strict; use warnings; my $len = 5000; my $over = 200; my $seq_id=$ARGV[0]; my $seqFile = $ARGV[1]; my $seq; open(my $fh, "2054 days ago
Installing pb-assembly on Linux !
...libreadline/6.3-foss-2016a Armadillo/2.4.4-goolf-1.4.10-Python-2.7.3...netCDF-Fortran/4.4.3-foss-2016a FFTW/3.3.3-gompi-1.6.10...el-2013.0.028 GraphicsMagick/1.3.23-foss-2016a...me: 0:00:00 22.67 MB/s avro-1.8.0-py2 100% |###############...2045 days ago
- ...e. remote: Counting objects: 100% (6/6), done. remote: Comp...: Total 680 (delta 0), reused 1 (delta 0), pack-reused 674 R...rig.links/000000F_2769948-2970164.fasta greg200k-sv2.2/orig....eg200k-sv2.2/subreads2.fasta 100 18.6M 100 18.6M 0 0...
2045 days ago
Perl script to create a consensus of nucleotide sequences !
...set w to the length of the longest element foreach my $j ( 0 .. $w-1 ){ # Initialize the...@mi_letters = map { [split '', uc $_] } @mi; foreach my $j ( 0 .. $w-1 ){ $H{ $_->[$j] }->[$j...2043 days ago
- ...~~~~~~~~~~~~~~~~~~~ init.c:721:3: warning: ignoring return v...~~~~~~~~~~~~~~~~~~~ init.c:981:5: warning: ignoring return v...~~~~~~~~~~~~~~~~~~~~~ init.c:1568:5: warning: ignoring retur...~~~~~~~~~~~~~~~~~ FracPair.c:115:9: warning: ignoring return...
2038 days ago
- ...ools/htslib/releases/download/1.9/htslib-1.9.tar.bz2 --2018-10-25 13:36...-2e65be.s3.amazonaws.com)|52.216.82.208|:443... connected. H...5 htslib-1.9/faidx.c htslib-1.9/hfile.c htslib-1.9/hfile_g...b-1.9/test/realn02.fa htslib-1.9/test/realn02.fa.fai htslib...
2030 days ago
Installing Platypus on Ubuntu !
...remote: Enumerating objects: 1394, done. remote: Total 1394 (delta 0), reused 0 (delta...l/lib /usr/local/share/man/man1 /usr/local/share/man/man5 /us...) warning: cython/arrays.pyx:1:0: __getslice__, __setslice__...p.c.pysam.c: At top level: cc1: warning: unrecognized comman...2030 days ago
- ...[0;30m' # Black Red='\033[0;31m' # Red Green='\033...# White # Bold BBlack='\033[1;30m' # Black BRed='\03...33[1;33m' # Yellow BBlue='\033[1;34m' # Blue BPurple='...[0;90m' # Black IRed='\033[0;91m' # Red IGreen='\033...
2029 days ago
- #! /usr/bin/Rscript ## Collect arguments args
2015 days ago
- #!/bin/bash Plot the coverage script chr=$1 start=$2 end=$3 samtools depth deduped_MA605.bam > deduped_MA605.coverage awk '$1 == $chr {print $0}' deduped_MA605.coverage > chr1_MA605.coverage #awk '$1 ==...
2015 days ago
