Install BLAST in Ubuntu/Linux and Window !
#On ubuntu sudo apt-get install ncbi-blast+ #Ubuntu Conda installation conda install.../ncbi-blast-2.7.1+-win64.exe with your web browser. #If that FTP links does not work, try HTTP in...1160 days ago
2930 days ago
Retrieve NCBI GenBank records with a range of accession numbers
#!/usr/bin/perl #FILE: ncbi_search.pl #AUTH: Paul Stothard (paul.sto...s => 0, maxRetries => 5, hel...v' => \$param{verbose}, 'h|hel...axRetries} ) { die("Too many fai...tries} ) { die("Too many failures--giv...2929 days ago
2885 days ago
2706 days ago
BASH script for SelfBLAST a genome
#!/bin/bash #self BLAST a genome -- Expecting you have blast and samtools installed in your system #Author: J...nce to blast" SEQ=$FASTAFILE else echo "Something went wrong $USER - Contact jitendra"...2665 days ago
Create genome scaffolding with Perl
#!/usr/bin/perl use warnings; use...Long qw(:config auto_version auto_help pass_through); our $VERSIO...DVHBXN-/TGCAARYSWKMHBDVXN-/; # wor...-message => "Error: Unkno...a good likelihood that this will work...ejecting match '%s' vs '%s': too many bases trimmed...2321 days ago
Install Python locally on shared Linux server !
#Install python to local directory #Firstly, I create a folder...l #Notice the prefix option, it is mandatory for this to work. T...-#2.7.11/python Install pip #Pip is a program used to help us easily in...2111 days ago
2088 days ago
Installing pb-assembly on Linux !
[jnarayan@hmem00 ~]$ module avail --------------------------...# # As PacBio tools distributed via Bioconda are not covered by any service # # level agreeme...or the like, please *do not* contact a PacBio Field # # Ap...extent or within any time frame....2047 days ago