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Bpipe - a tool for running and managing bioinformatics pipelines
...t of a series of processing stages - known as 'pipelines'. January 20th, 2016 - New! Bpipe 0.9.9 released! Download latest, all Documentation Mailing List (Google Group) Bp...2919 days ago
Stand-alone programs for Bioinformatician
This directory contains applications for stand-alone use, built specifically for a Linux 64-bit machine. For help on the bigBed and bigWig applications see:http://genome.ucsc...2919 days ago
- ...et the remove duplicate values to 'No' if you do not want duplicates to be removed. Clicking on submit then returns a table of your inputs matched against all the outputs selected i...
2908 days ago
- ...and its variants, but also target-capture methods such as Agilent SureSelect methyl-seq. In addition, methylKit can deal with base-pair resolution data for 5hmC obtained from Tab-seq or oxBS-seq....
2907 days ago
- ...symbionts and parasites using taxon-annotated GC-coverage plots. Sujai Kumar, Martin Jones, Georgios...ality assessment and control of high-throughput sequencing data). It contains bash/perl/R scripts for run...
2897 days ago
CNIDARIA: fast, reference-free phylogenomic clustering
...0% accuracy at supra-species level and 78% accuracy for species level. Availability and Implementation: Cnidaria is written in C++ and Python and is available at http://www.ab.wur.nl/...2894 days ago
- ...) of gene and gene clusters.Author: Guangchuang Yu <guangchuangyu at gmail.com> with contributions from Li-Gen Wang and Giovanni Dall'Olio.Maintainer: Guangchuang Yu <gu...
2894 days ago
- ...p;references cited below for a complete explanation of parameter selection and result interpretation. A brief tutorial page is also available on-line.
2888 days ago
- ...ecting HGT between closely related species or strains is challenging, as the phyl...n detecting HGT between congeneric species or strains, especially in clinical mic...candidate HGT events between closely related strains. The method confirms candid...
2888 days ago
Linux command line exercises for NGS data processing
...use a shell that is a program that takes your commands from the keyboard and gives them to the operating system. Most Linux systems utilize Bourne Again SHell (bash), but there are...2888 days ago
