Results for "AI"
Bio-Scripts
Installing pb-assembly on Linux !
...makeflow/5.2.3 cairo/1.14.10-GCCcore-6.4.0....4-foss-2016b-Python-2.7.12 cairo/1.14.6-foss-2016a...onda python-sortedcontainers: 2.0.4-py_0...n License, Copyright and Disclaimer...2035 days ago
- ...nsStar.o nsStar.c nsStar.c: In function ‘nsStarPairsOrParensFull’: nsStar.c:30:.../shared -I../../../src/shared/constants -c -o pairsPr.o pairsPr.c pairsPr.c: I...stants -I../../shared -I../../../src/shared/rng pairs.o -o ../../../bin/pairs -L....
2027 days ago
- ...AC-SHA256&X-Amz-Credential=AKIAIWNJYAX4CSVEH53A%2F20181025%2Fu...lib-1.9/errmod.c htslib-1.9/faidx.5 htslib-1.9/faidx.c htsl...c2.fa htslib-1.9/test/c2.fa.fai htslib-1.9/test/ce#1.sam ht...cf_sr_sort.o bgzf.o errmod.o faidx.o hfile.o hfile_net.o hts.o...
2020 days ago
Installing Platypus on Ubuntu !
...gcc -g -Wall -O2 -I. -c -o faidx.o faidx.c gcc -g -Wall -O2...ipe for target 'installdirs' failed make: *** [installdirs] E...ite-packages/Cython/Compiler/Main.py:367: FutureWarning: Cytho...ite-packages/Cython/Compiler/Main.py:367: FutureWarning: Cytho...2020 days ago
Setting up falconUnzip conda environments for genome assembly !
...KB bioconda python-sortedcontainers-2.0.5| py_0...bioconda python-sortedcontainers: 2.0.5-py_0...######### | 100% python-sortedcontain | 25 KB | ##############...tion on License, Copyright and Disclaimer...1991 days ago
- ...RATE"], ["CREATE", "TRACT"], ["DWAYNE", "DUANE"], ); for my $word_pair (@tests) { #Nice way to split the values my ($w1, $w2) = @$word_pair; my $simw = simw $w1, $...
1801 days ago
Palindrome Simulation commands !
...ndromeSimulated.fa 3319 ~/Tools/art_bin_MountRainier/art_illumina -ss MSv3 -sa...meSimulated.fa -p -l 251 -f 100 -m 300 -s 10 -o paired_dat 3320 ~/Tools/art_bi.../SPAdes-3.10.1-Linux/bin/spades.py --careful -1 paired_dat1.fq -2 paired_dat2.fq...1737 days ago
- Map them agaist reference avaga genome using following codes git clone https://github.com/lh3/bwa.git cd bwa; make bwa index ref.fa bwa mem -x pacbio ref.fa pacbio.fq > aln.sam bwa mem -x ont2d ref.fa ont-2D.fq > aln.sam
1726 days ago
Perl script to run in parellel !
...start_new_XFOIL_instance($genome{$chr_set}{name}, $genome{$chr_set}{nuc_seq}); } } } $pm->finish; } $pm->wait_all_children; sub output_...1688 days ago
Samtools commands for bioinformatician !
...ej.bam > sal_sej_sorted.bam ### indexing sorted file # ouput is file.bai # always index sorted files...' ### flagstat # output file has two columns: QC-passed reads and QC-failed reads # and rows: total r...1604 days ago
