Strand Life Sciences announces the release of Strand NGS v3.1 at ASHG 2017
...trand Life Sciences announces the release of Strand NGS v3.1 at ASHG 2017 ORLANDO, USA, Oct 17, 2017/ PRNewswire/ Strand NGS now...e Officer, Strand Life Sciences. Visit Strand Life Sciences at ASHG booth #1017 to know more abou...2386 days ago
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3d-dna: 3D de novo assembly (3D DNA) pipeline
This code is designed to enable anyone to reproduce the Hs2-HiC and the AaegL4 genom...he Aedes aegypti genome using Hi-C yields chromosome-length scaffolds. Science, 2017. Unless otherwise noted, all...2320 days ago
Carefully opt for human reference genome
Heng Li posted several issues with the human reference genomes given in these resour...them? Here are a collection of potential issues: More at http://lh3.github.io/2017/11/13/which-human-reference-g...1538 days ago
MMseqs2.0: ultra fast and sensitive protein search and clustering suite
MMseqs2 (Many-against-Many sequence searching) is a software suite to search and clu...the analysis of massive data sets. Nature Biotechnology, doi: 10.1038/nbt.3988 (2017).2236 days ago
SciLifeLab tutorial for bioinformatics analysis !
SciLifeLab is a national center for molecul...vember - Uppsala2016 November - Uppsala2017 November - Uppsala Introduct...ber - Uppsala2016 November - Umeå2017 January - Uppsala2017 May - G...enome Assembly 2016 November - Uppsala2017 November - Uppsala RNA-seq c...2210 days ago
GAPPadder: A Sensitive Approach for Closing Gaps on Draft Genomes with Short Sequence Reads
This software is provided ``as is” without warranty of any kind. In no event s...Approach for Closing Gaps on Draft Genomes with Short Sequence Reads." bioRxiv (2017): 125534.2183 days ago
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SALSA: A tool to scaffold long read assemblies with Hi-C
This code is used to scaffold your assemblies using Hi-C data. This version implemen...caffolding. Ghurye, J., Pop, M., Koren, S., Bickhart, D., & Chin, C. S. (2017). Scaffolding of long read as...2151 days ago
ASplice: a scalable and memory-efficient algorithm for de novo transcriptome assembly
With increased availability of de novo assembly algorithms, it is feasible to study...u.edu/shsze/asplice. Sze SH, Pimsler ML, Tomberlin JK, Jones CD, Tarone AM. (2017) A scalable and memory-effici...2133 days ago