BIMA V3: an aligner customized for mate pair library sequencing
Summary: Mate pair library sequencing is an effective and economical method for detecting genomic structural variants...oints within reads increases mapping and alignment complexity. We describe an algori...2712 days ago
e-RGA: enhanced Reference Guided Assembly of Complex Genomes
Next Generation Sequencing has totally changed genomics: we are able to produce huge am...ore difficult, de novo assembly being on top of this list. Despite efforts to design tools able to assemble, de no...2707 days ago
1984 days ago
Prodigal (Prokaryotic Dynamic Programming Genefinding Algorithm)
Prodigal (Prokaryotic Dynamic Programming Genefinding Algorithm) is a microbial (bacterial and archaeal) gene finding program developed at Oak Ridge National Laboratory and...2697 days ago
2672 days ago
2662 days ago
FSA: Fast Statistical Alignment
FSA is a probabilistic multiple sequence alignment algorithm which uses a "distance-based" approach to aligning homologous protein, R...ing hundreds or even thousands of sequences using a randomized inference algori...2658 days ago
2648 days ago
DAGchainer: Computing Chains of Syntenic Genes in Complete Genomes
The DAGchainer software computes chains of syntenic genes found within complete genome sequences. As input, DAGchaine...aximally scoring chains of ordered gene pairs are computed and reported. This algori...2646 days ago
2635 days ago