Computer simulation of genetic mechanism !!
...program for detecting recent effective population size reductions from allele data frequencies http://www.e...more flexible and useful settings. If you need models with more than 2 alleles please use the GenomePop pro...2990 days ago
Tools and Method for Haplotype phasing !
..., is best exploited through phased haplotypes, which classify the alleles co-located on the same chrom...ich of the two parental chromosomes, or haplotypes, falls on a specific allele. Fortunately, new advances in...1354 days ago
InfoGenomeR: Integrative reconstruction of cancer genome karyotypes
...oint graph to model the connectivity among genomic segments at the genome-wide scale. InfoGenomeR integrates cancer purity and ploidy, total CNAs, allele-specific CNAs, and haplotype...1112 days ago
ConPADE: Genome Assembly Ploidy Estimation from Next-Generation Sequencing Data
ConPADE (Contig Ploidy and Allele Dosage Estimation), a probabilistic method tha...oidy of any given contig/scaffold based on its allele proportions. In the process,...cability of the method for variant calling and allele dosage estimation. Results fo...2642 days ago
Bioinformatics approach to Boar Taint
...the aid of FreeBayes , a variant caller tool. A final list of SNPs was prepared after filtering SNPs on the basis of SNP quality, coverage of SNP allele, functional and structural an...3805 days ago
Genome Assembly Tools and Software - PART2 !!
...by the Illumina Genome Analyzer ConPADE 1.00 – Contig Ploidy and Allele Dosage EstimationConPADE is a tool used to estimate contig ploidy and allele dosage in polyploid genome as...2701 days ago
List of generic simulation software/tools/resource with brief description and homepage !!!
...cent effective population size reductions from allele data frequencies http://www.e...settings. If you need models with more than 2 alleles please use the GenomePop pro...r generating haplotype data with pre-specified allele frequencies and LD coefficien...3752 days ago
Commercial and public next-gen-seq (NGS) software
...a analysis. Streamlined analysis workflows for: ChIP-Seq, RNA-Seq, DNA-Seq, DNA Methylation, Gene Expression, Exon, miRNA Expression, Copy Number, Allele-Specific Copy Number, LOH, As...3534 days ago
3842 days ago
Webinar on 'An integrated RNA and DNA approach to unravel genetic regulation in cancer'
...one to investigate the consequences of genomic changes in the RNA transcripts including germline and somatic changes, imprinting, RNA editing and allele specific expression (ASE). In...3386 days ago
Research Assistant @ NATIONAL BUREAU OF ANIMAL GENETIC RESOURCES
...Thepost duration is Upto 31st March 2015 or earlier. 2. One post of Senior Research Fellow under NAIP (Component-4) Bioprospecting of genes and allele mining for abiotic stress tol...3821 days ago
2090 days ago
MALVA: Genotyping by Mapping-free ALlele Detection of Known VAriants
MALVA is able to genotype multi-allelic SNPs and indels without mapping reads MALVA calls correctly more indels than the most widely adopted genotyping pipelines Mapping-free approaches are as accurate as alignment-based ones, while being faster More at https://www.sciencedirect.com/scien...Tags: MALVA, Genotyping, Mapping-free, ALlele, Detection, Known, VAriants, snp
1574 days ago
SVEngine: Allele Specific and Haplotype Aware Structural Variants Simulator
SVEngine (Structural Variants Engine) SVEngine is a multi-purpose and self-contained simulator for whole genome scale spike-in of thousands of SV events of various types in both single-sample and matched sample scenarios. SVEngine takes as input reference contigs in FASTA files, variant meta ...Tags: SVEngine, Allele, Haplotype, Aware, Structural, Variants, Simulator, Simulation
1416 days ago