ARC: pipeline which facilitates iterative, reference guided de novo assemblies
ARC is a pipeline which facilitates iterative, reference guided de novo assemblies with the intent of: Reducing time in analysis and increasing accuracy of results by only...2120 days ago
LSC :a long read error correction tool
Getting Started These simple steps will help you integrate LSC into your transcriptomics analysis pipeline. Read the LSC_requirements for running LSC. Download and...2113 days ago
NextSV: a meta-caller for structural variants from low-coverage long-read sequencing data
...sequencing data. NextSV integrates three aligners and three SV callers and generates two integrated call sets (sensitive/stringent) for different analysis purpose. The output of NextSV...2109 days ago
AlignQC: A tool for assessing an alignment, and generating reports that are easy to share
Long read alignment analysis. Generate a reports on sequence alignments for...r patterns, annotations and rarefraction curve analysis. The most basic analysis only...patible xhtml to visualize/share/store/extract analysis results. https://f1000resear...2108 days ago
LRCstats: a tool for evaluating long reads correction methods
...ncing technologies, such as those produced by Illumina. However, long reads are plagued by high error rates, which can cause issues in downstream analysis. Long read correction algorit...2093 days ago
2079 days ago
SeqMonk:A tool to visualise and analyse high throughput mapped sequence data
...is a program to enable the visualisation and analysis of mapped sequence data. It w...Creation of data groups for visualisation and analysis Visualisation of mapped regi...ow comparisons between data sets Statistical analysis of data to find regions of in...2073 days ago
S-plot2: Rapid Visual and Statistical Analysis of Genomic Sequences
S-plot2 creates an interactive, two-dimensional heatmap capturing the similarities and dissimilarities in nucleotide usage between genomic sequences (partial or complete...2052 days ago
CSBFinder: Discovery of colinear syntenic blocks across thousands of prokaryotic genomes
...ace, that can also be executed via command line. CSBFinder implements a novel methodology for the discovery, ranking, and taxonomic distribution analysis of colinear syntenic blocks (...2030 days ago
2030 days ago