2552 days ago
CAR: Reconstructing Contiguous Regions of an Ancestral Genome
...that accounts for 96.8% of the available human genome sequence data. The precision is further increased by mapping inversions as small as 31 bp. Analysis of the predicted evolutionary...2538 days ago
npScarf: Scaffolding and Completing Assemblies in Real-time Fashion
...sequencing. The pipeline can run on a computing cluster as well as on a laptop computer for microbial datasets. It also facilitates the real-time analysis of positional information suc...2533 days ago
Synteny Portal: a web-based application portal for synteny block analysis
Synteny Portal, a versatile web-based application portal for constructing, visualizing and browsing synteny blocks. With Synteny Portal, users can easily (i) construct s...2532 days ago
BEDOPS v2.4.26: high-performance genomic feature operations
...ith regard to overlap and proximity relationships between data sets. It aims to be scalable and flexible, facilitating the efficient and accurate analysis and management of large-scale...2513 days ago
Omega2: metagenome assembly pipeline
...overlap graph of reads was simplified by removing transitive edges and trimming short branches. Unitigs were generated based on minimum cost flow analysis of the overlap graph and then...2485 days ago
GeneProf: analysis of high-throughput sequencing experiment
...Next-Generation Sequencing" or NGS): Next-gen analysis for next-gen data! Some of G...e! (cp. Section 'System Requirements'). Analysis wizards make your life easy:S...). Versatile modules:Advanced users and data analysis experts benefit from GeneProf...2490 days ago
2481 days ago
Mesquite: A modular system for evolutionary analysis
...lyze comparative data about organisms. Its emphasis is on phylogenetic analysis, but some of its modules conc...ern population genetics, while others do non-phylogenetic multivariate analysis. Because it is modular, the a...2477 days ago
Sequence - Evolution - Function; Computational Approaches in Comparative Genomics
...the principles and approaches of functional genomics and of the potential and limitations of computational and experimental approaches to genome analysis....2458 days ago