Useful Publications and Websites for Deep Sequencing Data Analysis
Global overview papers Next generation quantitative genetics in plants....al design Statistical design and analysis of RNA sequencing data. Auer...ed platform for visualization and analys...Text Chromatin immunoprecipation analysis: ChIP-seq Ch...ware package called FSTpoolit for analys...3785 days ago
List of bioinformatics open source projects/software.
Open source software is software that can be freely used, changed, a...b/Software.html Metagenomics analysis software Anduril http://www...d workflow framework for data analysis Armadillo workflow platform...http://www.broadinstitute.org/cancer/software/genepattern/ Scient...3762 days ago
List of generic simulation software/tools/resource with brief description and homepage !!!
List of generic simulation software/tools/resource with brief descrip.../?source=navbarGASP Genometric Analysis Simulation Program. A softwar...dividual-based program for the analysis of quantitative traits with...model for population viability analysis (PVA). http:/...www.evolution-of-life.com www.cancer...3742 days ago
List of In-silico Binding Site Prediction Tools
Following are the list of In-silico Binding Site Prediction in Proteins tools CA...in functional surfaces identified by shape analys...abases are also available enabling further analysis. PROSURFER:...during protein structure visualization and analys...3749 days ago
Next generation sequencing in R or bioconductor environment
There are many R software and bioconductor packages for NGS data analysis, some of them are as follows...cient sequence management and analysis in R. It contains many speed...basis for many other sequence analysis packages. Documentation...data. Documentation ChIP-Seq Analysis Packages Bio...3630 days ago
Commercial and public next-gen-seq (NGS) software
Integrated solutions CLCbio Genomics Workbench - de novo and referen...xt Generation Sequencing data analysis. JMP Genomics - Next gen visu...GS, microarray, and qPCR data analysis. Streamlined analysis workflo...e genomes, and carry out post-analysis. ZOOM is deve...pecifically optimized for the analys...3524 days ago
3501 days ago
Apps for Busy Bioinformatics Researchers !!!
DNAApp: DNAApp: for iPhone/iPad This is an iOS app that allows for the opening and analysis of DNA sequencing files - ab1. It includes...android app that allows for the opening and analysis of DNA sequen...l Biology Center at Memorial Sloan-Kettering Cancer...3547 days ago
3501 days ago
A guide for complete R beginners !
This tutorial is intended to introduce users quickly to the basic...sks that biologists need to perform some basic analysis: load a...e been created to perform application specific tasks. e.g. analys...3367 days ago