2992 days ago
2992 days ago
2992 days ago
PhyloGrapher - Graph Visualization Tool
PhyloGrapher is a program designed to visualize and study evolutionary relationshi...lies of homologous genes or proteins (elements).PhyloGrapher is a drawing tool that generates custom graphs...2955 days ago
QUAST: quality assessment tool for genome assemblies
QUAST evaluates genome assemblies. For metagenomes, please see MetaQUAST project.It can works both with and without a given reference genome.The tool accepts multiple assemblies,...2955 days ago
REAPR: a universal tool for genome assembly evaluation
REAPR is a tool that evaluates the accuracy of a genome assembly using mapped paired end rea...n order to score each base of the assembly. http://www.sanger.ac.uk/science/tools/reapr2955 days ago
2946 days ago
Trimmomatic: A flexible read trimming tool for Illumina NGS data
Paired End: java -jar trimmomatic-0.35.jar PE -phred33 input_forward.fq.gz input_reverse.fq.gz output_forward_paired.fq.gz output_forward_unpaired.fq.gz output_revers...2946 days ago
HOMER: Software for motif discovery and next-gen sequencing analysis
...before diving head first into more advanced analysis tools such as HOMER. Setting up you...e novo transcript discovery and differential analysis with Cufflinks Differential...icroarray or RNA-Seq) Microarray Basic analysis of Affymetrix Gene Expres...2935 days ago
mrFAST: Micro Read Fast Alignment Search Tool
mrFAST is a read mapper that is designed to map short reads to reference genome with a special emphasis on the discovery of structural variation and segmental duplicat...2935 days ago